List of all proteins in the group
Allows comparison of IDs and descriptions
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Display an MSA of all sequences in the group.
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The "Phyletic profile" displays OMA groups
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OMA

Keyword Protein Sequence Group Entry

OMA Group 206404

binding protein
This group has 728 members: 728 [B]acteria
Fingerprint: NVHISPH

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Acidobacteria bacterium (strain Ellin345)ACIBL01990  UniProtKB/Swiss-Prot SSRP_ACIBL  SsrA-binding protein
[B] Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670)ACIC502800  UniProtKB/TrEMBL C1F4B8  SsrA-binding protein
[B] Solibacter usitatus (strain Ellin6076)SOLUE01038  UniProtKB/Swiss-Prot SSRP_SOLUE  SsrA-binding protein TIGRFAM: SsrA-binding protein PFAM: SmpB protein KEGG: aba:Acid345_1996 SsrA-binding protein
[B] Corynebacterium diphtheriaeCORDI00731  UniProtKB/Swiss-Prot SSRP_CORDI  Similar to Mycobacterium leprae SsrA-binding protein SmpB or ML0671 or MLCB1779.19c SW:SSRP_MYCLE (O32881) (160 aa) fasta scores: E(): 2.7e-40, 62.42% id in 157 aa, and to Escherichia coli SsrA-binding protein SmpB or SmqB or B2620 or Z3913 or ECS3482 SW:SSRP_ECOLI (P32052) (159 aa) fasta scores: E(): 2.1e-20, 44.72% id in 161 aa SsrA-binding protein
[B] Corynebacterium efficiensCOREF00795  UniProtKB/Swiss-Prot SSRP_COREF  similar to AL138851-25|CAB72212.1| percent identity: 55 in 155 aa putative SsrA-binding protein
[B] Corynebacterium glutamicumCORGL01496  UniProtKB/Swiss-Prot SSRP_CORGL  SsrA-binding protein
[B] Corynebacterium glutamicum (strain R)CORGB00921  UniProtKB/Swiss-Prot SSRP_CORGB  Hypothetical protein
[B] Corynebacterium jeikeium (strain K411)CORJK00434  UniProtKB/Swiss-Prot SSRP_CORJK  
[B] Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109)CORU701491  UniProtKB/Swiss-Prot SSRP_CORU7  Putative uncharacterized protein
[B] Mycobacterium abscessus (strain ATCC 19977 / DSM 44196)MYCA903444  UniProtKB/Swiss-Prot SSRP_MYCA9  SsrA-binding protein
[B] Mycobacterium paratuberculosisMYCPA03140  UniProtKB/Swiss-Prot SSRP_MYCPA  SmpB
[B] Mycobacterium gilvum (strain PYR-GCK)MYCGI04344  UniProtKB/Swiss-Prot SSRP_MYCGI  SsrA-binding protein TIGRFAM: SsrA-binding protein PFAM: SmpB protein KEGG: mmc:Mmcs_1613 SsrA-binding protein
[B] Mycobacterium lepraeMYCLE00668  UniProtKB/Swiss-Prot SSRP_MYCLE  Similar to M. tuberculosis smpB, Rv3100c, SsrA-binding protein, SW:SMPB_MYCTU (P96294) (160 aa); Fasta score E(): 0, 84.9% identity in 159 aa overlap. Similar to many e.g. Escherichia coli smpB, SSRA-binding protein essential for the peptide-tagging activity of SsrA (tmRNA), SW:SMPB_ECOLI (P32052) (159 aa); Fasta score E(): 4.1e-19, 41.8% identity in 146 aa overlap. Previously sequenced as SW:SMPB_MYCLE (O32881) (160 aa); Fasta score E(): 0, 99.4% identity in 160 aa overlap. Contains Pfam match to entry PF01668 SmpB, SmpB protein. Contains PS01317 Protein smpB signature. putative SsrA-binding protein
[B] Mycobacterium leprae (strain Br4923)MYCLB00664  UniProtKB/Swiss-Prot SSRP_MYCLB  Putative SsrA-binding protein
[B] Mycobacterium marinum (strain ATCC BAA-535 / M)MYCMM01496  UniProtKB/TrEMBL B2HGJ7  SsRNA-binding protein SmpB
[B] Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)MYCS201945  UniProtKB/Swiss-Prot SSRP_MYCS2  SsrA-binding protein
[B] Mycobacterium sp. (strain JLS)MYCSJ01566  UniProtKB/Swiss-Prot SSRP_MYCSJ  SsrA-binding protein TIGRFAM: SsrA-binding protein PFAM: SmpB protein KEGG: mmc:Mmcs_1613 SsrA-binding protein
[B] Mycobacterium sp. (strain KMS)MYCSK01614  UniProtKB/Swiss-Prot SSRP_MYCSK  SsrA-binding protein TIGRFAM: SsrA-binding protein PFAM: SmpB protein KEGG: mmc:Mmcs_1613 SsrA-binding protein
[B] Mycobacterium sp. (strain MCS)MYCSS01590  UniProtKB/Swiss-Prot SSRP_MYCSS  SsrA-binding protein
[B] Mycobacterium bovisMYCBO03117  UniProtKB/Swiss-Prot SSRP_MYCBO  Mb3127c, smpB, len: 160 aa. Equivalent to Rv3100c, len: 160 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 160 aa overlap). Probable smpB, small protein b related to several bacterial small protein b homologs e.g. O32881|SSRP_MYCLE|ML0671|MLCB1779.19c from Mycobacterium leprae (160 aa), FASTA scores: opt: 914, E(): 1.1e-52, (84.9% identity in 159 aa overlap); Q9L1S9|SMPB from Streptomyces coelicolor (159 aa), FASTA scores: opt: 568, E(): 3.3e-30, (55.15% identity in 145 aa overlap); O32230|SSRP_BACSU from Bacillus subtilis (156 aa), FASTA scores: opt: 511, E(): 1.7e-26, (47.05% identity in 153 aa overlap); etc. BELONGS TO THE SSRP FAMILY. PROBABLE SSRA-BINDING PROTEIN SMPB
[B] Mycobacterium bovis (strain BCG / Paris 1173P2)MYCBP03098  UniProtKB/Swiss-Prot SSRP_MYCBP  Probable ssrA-binding protein smpB
[B] Mycobacterium tuberculosisMYCTU04226  UniProtKB/Swiss-Prot SSRP_MYCTU  SsrA-binding protein
[B] Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra)MYCTA03161  UniProtKB/Swiss-Prot SSRP_MYCTA  SsrA-binding protein SmpB
[B] Mycobacterium tuberculosis (strain F11)MYCTF03035  UniProtKB/TrEMBL A5WS05  Ssra-binding protein smpB Mapped to H37Rv Rv3100c
[B] Mycobacterium ulcerans (strain Agy99)MYCUA01951  UniProtKB/Swiss-Prot SSRP_MYCUA  ssRNA-binding protein SmpB cytoplasmic protein binds specifically to the SSRA RNA (TmRNA) and is required for stable association of SSRA with ribosomes. thought to be implicated in the survival of bacterium within macrophages.
[B] Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1)MYCVP01836  UniProtKB/Swiss-Prot SSRP_MYCVP  SsrA-binding protein TIGRFAM: SsrA-binding protein PFAM: SmpB protein KEGG: mmc:Mmcs_1613 SsrA-binding protein
[B] Nocardia farcinicaNOCFA04486  UniProtKB/Swiss-Prot SSRP_NOCFA  putative small protein B
[B] Rhodococcus erythropolis (strain PR4 / NBRC 100887)RHOE402306  UniProtKB/TrEMBL C0ZXD5  SsrA-binding protein
[B] Rhodococcus opacus (strain B4)RHOOB06461  UniProtKB/TrEMBL C1B1L8  SsrA-binding protein
[B] Rhodococcus sp. (strain RHA1)RHOSR06320  UniProtKB/Swiss-Prot SSRP_RHOSR  SsrA-binding protein
[B] Acidothermus cellulolyticus (strain ATCC 43068 / 11B)ACIC101724  UniProtKB/Swiss-Prot SSRP_ACIC1  SsrA-binding protein TIGRFAM: SsrA-binding protein PFAM: SmpB protein KEGG: fra:Francci3_0801 SsrA-binding protein
[B] Frankia alni (strain ACN14a)FRAAA01321  UniProtKB/Swiss-Prot SSRP_FRAAA  SsrA-binding protein Evidence 2b : Function of strongly homologous gene; Product type e : enzyme
[B] Frankia sp. (strain CcI3)FRASC00778  UniProtKB/Swiss-Prot SSRP_FRASC  SsrA-binding protein
[B] Frankia sp. (strain EAN1pec)FRASN05611  UniProtKB/Swiss-Prot SSRP_FRASN  SsrA-binding protein
[B] Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216)KINRD03742  UniProtKB/Swiss-Prot SSRP_KINRD  SsrA-binding protein
[B] Tropheryma whipplei (strain TW08/27)TROW800544  UniProtKB/Swiss-Prot SSRP_TROW8  Similar to Streptomyces coelicolor ssrA-binding protein SmpB or SCO2966 or SCE59.25c SWALL:Q9L1S9 (EMBL:AL138851) (159 aa) fasta scores: E(): 2.9e-23, 47.02% id in 151 aa, and to Mycobacterium tuberculosis ssra-binding protein smpb or rv3100c or mt3184 or mtcy164.11C SWALL:SSRP_MYCTU (SWALL:P96294) (160 aa) fasta scores: E(): 6.8e-21, 44.21% id in 147 aa ssrA-binding protein
[B] Tropheryma whipplei (strain Twist)TROWT00201  UniProtKB/Swiss-Prot SSRP_TROWT  tmRNA (SsrA)-binding protein
[B] Leifsonia xyli (subsp. xyli)LEIXX01057  UniProtKB/Swiss-Prot SSRP_LEIXX  identified by sequence similarity small protein B
[B] Arthrobacter aurescens (strain TC1)ARTAT02528  UniProtKB/Swiss-Prot SSRP_ARTAT  SsrA-binding protein
[B] Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360)ARTCA02357  UniProtKB/Swiss-Prot SSRP_ARTCA  SsrA-binding protein
[B] Arthrobacter sp. (strain FB24)ARTS202635  UniProtKB/Swiss-Prot SSRP_ARTS2  SsrA-binding protein TIGRFAM: SsrA-binding protein PFAM: SmpB protein KEGG: sco:SCO2966 small protein B homologue
[B] Salinispora arenicola (strain CNS-205)SALAI00900  UniProtKB/Swiss-Prot SSRP_SALAI  SsrA-binding protein
[B] Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440)SALTO00974  UniProtKB/Swiss-Prot SSRP_SALTO  SsrA-binding protein
[B] Nocardioides sp. (strain BAA-499 / JS614)NOCSJ01229  UniProtKB/Swiss-Prot SSRP_NOCSJ  SsrA-binding protein
[B] Propionibacterium acnesPROAC01338  UniProtKB/Swiss-Prot SSRP_PROAC  SsrA-binding protein
[B] Saccharopolyspora erythraea (strain NRRL 23338)SACEN01075  UniProtKB/Swiss-Prot SSRP_SACEN  SsrA-binding protein
[B] Phytoplasma sp. (strain STRAWB1)STRAW05105  UniProtKB/Swiss-Prot SSRP_STRAW  SsrA-binding protein
[B] Streptomyces coelicolorSTRCO02944  UniProtKB/Swiss-Prot SSRP_STRCO  SCE59.25c, smpB, small protein B homologue, len: 159 aa; highly similar to SW:SMPB_ENTFA (EMBL:M90060) Enterococcus faecalis small protein B homologue SmpB, 154 aa; fasta scores: opt: 559 z-score: 693.2 E(): 3.3e-31; 56.1% identity in 155 aa overlap. Contains Pfam match to entry PF01668 SmpB, SmpB protein and match to Prosite entry PS01317 Protein smpB signature small protein B homologue
[B] Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350)STRGG04434  UniProtKB/TrEMBL B1VVM9  Putative small protein B
[B] Thermobifida fusca (strain YX)THEFY02467  UniProtKB/Swiss-Prot SSRP_THEFY  SmpB protein
[B] Bifidobacterium longumBIFLO00821  UniProtKB/Swiss-Prot SSRP_BIFLO  SsrA-binding protein
[B] Bifidobacterium longum (strain DJO10A)BIFLD00922  UniProtKB/Swiss-Prot SSRP_BIFLD  TmRNA-binding protein
[B] Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)RUBXD01578  UniProtKB/Swiss-Prot SSRP_RUBXD  SsrA-binding protein TIGRFAM: SsrA-binding protein PFAM: SmpB protein KEGG: bcl:ABC3002 SsrA RNA (tmRNA)-binding protein
[B] Symbiobacterium thermophilumSYMTH00331  UniProtKB/Swiss-Prot SSRP_SYMTH  tmRNA-binding protein
[B] Aquifex aeolicusAQUAE00214  UniProtKB/Swiss-Prot SSRP_AQUAE  SsrA-binding protein
[B] Sulfurihydrogenibium sp. (strain YO3AOP1)SULSY01050  UniProtKB/Swiss-Prot SSRP_SULSY  SsrA-binding protein
[B] Bacteroides fragilisBACFR03183  UniProtKB/Swiss-Prot SSRP_BACFR  similar to gp:AE016926_179 [Bacteroides thetaiotaomicron VPI-5482], percent identity 88 in 150 aa, BLASTP E(): 3e-72 SsrA-binding protein
[B] Bacteroides fragilis (strain ATCC 25285 / NCTC 9343)BACFN02951  UniProtKB/Swiss-Prot SSRP_BACFN  Similar to Porphyromonas gingivalis W83 SsrA-binding protein SmpB or PG0502 SWALL:AAQ65696 (EMBL:AE017173) (153 aa) fasta scores: E(): 7.7e-43, 74.48% id in 145 aa, and to Streptomyces coelicolor SsrA-binding protein SmpB or SCO2966 or SCE59.25c SWALL:SSRP_STRCO (SWALL:Q9L1S9) (138 aa) fasta scores: E(): 2.4e-26, 52.17% id in 138 aa putative SsrA-binding protein
[B] Bacteroides thetaiotaomicronBACTN00179  UniProtKB/Swiss-Prot SSRP_BACTN  SsrA-binding protein
[B] Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154)BACV802380  UniProtKB/Swiss-Prot SSRP_BACV8  SsrA-binding protein
[B] Azobacteroides pseudotrichonymphae genomovar. CFP2AZOPC00647  UniProtKB/TrEMBL B6YRU1  SsrA-binding protein
[B] Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)PARD800389  UniProtKB/Swiss-Prot SSRP_PARD8  SsrA-binding protein
[B] Porphyromonas gingivalisPORGI00428  UniProtKB/Swiss-Prot SSRP_PORGI  SsrA-binding protein
[B] Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257)PORG301401  UniProtKB/TrEMBL B2RKU4  Putative SsrA-binding protein
[B] Amoebophilus asiaticus (strain 5a2)AMOA500145  UniProtKB/TrEMBL B3EUI8  SsrA-binding protein
[B] Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101)FLAJ103418  UniProtKB/Swiss-Prot SSRP_FLAJ1  SsrA-binding protein
[B] Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511)FLAPJ01829  UniProtKB/Swiss-Prot SSRP_FLAPJ  SsrA-binding protein
[B] Gramella forsetii (strain KT0803)GRAFK02214  UniProtKB/Swiss-Prot SSRP_GRAFK  SsrA-binding protein
[B] Salinibacter ruber (strain DSM 13855)SALRD01574  UniProtKB/Swiss-Prot SSRP_SALRD  SsrA-binding protein identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086
[B] Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)CYTH301927  UniProtKB/Swiss-Prot SSRP_CYTH3  SsrA RNA binding protein
[B] Chlamydia muridarumCHLMU00340  UniProtKB/Swiss-Prot SSRP_CHLMU  similar to SP:P04034; identified by sequence similarity; putative small protein B
[B] Chlamydia trachomatisCHLTR00078  UniProtKB/Swiss-Prot SSRP_CHLTR  Small Protein B
[B] Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B)CHLTA00078  UniProtKB/Swiss-Prot SSRP_CHLTA  small protein B, SsrA-binding protein
[B] Chlamydia trachomatis (strain L2/434/Bu / ATCC VR902B)CHLT200327  UniProtKB/TrEMBL B0B9I4  SsrA-binding protein
[B] Chlamydia trachomatis (strain L2b/UCH-1/proctitis)CHLTB00327  UniProtKB/TrEMBL B0BB63  SsrA-binding protein
[B] Chlamydia pneumoniaeCHLPN00811  UniProtKB/Swiss-Prot SSRP_CHLPN  SsrA-binding protein
[B] Chlamydophila abortusCHLAB00427  UniProtKB/Swiss-Prot SSRP_CHLAB  Similar to Enterococcus faecalis ssra-binding (RNA-binding) protein SmpB or ef2616 SWALL:SSRP_ENTFA (SWALL:P59630) (154 aa) fasta scores: E(): 3.9e-24, 46.57% id in 146 aa, and to Streptococcus pneumoniae ssra-binding protein SmpB or sp0976 SWALL:Q97R56 (EMBL:AE007401) (155 aa) fasta scores: E(): 1.5e-25, 48.61% id in 144 aa ssra-binding protein
[B] Chlamydophila caviaeCHLCV00439  UniProtKB/Swiss-Prot SSRP_CHLCV  identified by match to PFAM protein family HMM PF01668 SsrA-binding protein
[B] Chlamydophila felis (strain Fe/C-56)CHLFF00561  UniProtKB/Swiss-Prot SSRP_CHLFF  ssrA-binding protein
[B] Parachlamydia sp. (strain UWE25) (subsp. Acanthamoeba sp.)PARUW01702  UniProtKB/Swiss-Prot SSRP_PARUW  conserved hypothetical protein
[B] Chlorobaculum parvum (strain NCIB 8327)CHLP800579  UniProtKB/TrEMBL B3QM55  SsrA-binding protein
[B] Chlorobium tepidumCHLTE00556  UniProtKB/Swiss-Prot SSRP_CHLTE  SsrA-binding protein
[B] Chlorobium chlorochromatii (strain CaD3)CHLCH01135  UniProtKB/Swiss-Prot SSRP_CHLCH  SmpB protein
[B] Chlorobium limicola (strain DSM 245 / NBRC 103803)CHLL200510  UniProtKB/TrEMBL B3EGI4  SsrA-binding protein
[B] Chlorobium phaeobacteroides (strain BS1)CHLPB01715  UniProtKB/TrEMBL B3ELD7  SsrA-binding protein
[B] Chlorobium phaeobacteroides (strain DSM 266)CHLPD00770  UniProtKB/Swiss-Prot SSRP_CHLPD  SsrA-binding protein TIGRFAM: SsrA-binding protein PFAM: SmpB protein KEGG: plt:Plut_0569 SsrA-binding protein
[B] Prosthecochloris vibrioformis (strain DSM 265)PROVI01187  UniProtKB/Swiss-Prot SSRP_PROVI  SsrA-binding protein TIGRFAM: SsrA-binding protein PFAM: SmpB protein KEGG: plt:Plut_0569 SsrA-binding protein
[B] Chloroherpeton thalassium (strain ATCC 35110 / GB-78)CHLT302279  UniProtKB/TrEMBL B3QWJ3  SsrA-binding protein
[B] Pelodictyon luteolum (strain DSM 273)PELLD00560  UniProtKB/Swiss-Prot SSRP_PELLD  SmpB protein
[B] Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1)PELPB00782  UniProtKB/TrEMBL B4SF03  SsrA-binding protein
[B] Prosthecochloris aestuarii (strain DSM 271 / SK 413)PROA200685  UniProtKB/TrEMBL B4S6J9  SsrA-binding protein
[B] Chloroflexus aggregans (strain MD-66 / DSM 9485)CHLAD00638  UniProtKB/Swiss-Prot SSRP_CHLAD  SsrA-binding protein
[B] Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl)CHLSY03498  UniProtKB/Swiss-Prot SSRP_CHLSY  SsrA-binding protein
[B] Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)CHLAA03243  UniProtKB/Swiss-Prot SSRP_CHLAA  SsrA-binding protein
[B] Roseiflexus castenholzii (strain DSM 13941 / HLO8)ROSCS04229  UniProtKB/Swiss-Prot SSRP_ROSCS  SsrA-binding protein TIGRFAM: SsrA-binding protein PFAM: SmpB protein KEGG: rrs:RoseRS_0189 SsrA-binding protein
[B] Roseiflexus sp. (strain RS-1)ROSS100179  UniProtKB/Swiss-Prot SSRP_ROSS1  SsrA-binding protein
[B] Dehalococcoides ethenogenes (strain 195)DEHE101371  UniProtKB/Swiss-Prot SSRP_DEHE1  identified by match to protein family HMM PF01668 SsrA-binding protein
[B] Dehalococcoides sp. (strain BAV1)DEHSB01267   ABQ17875.1  SsrA-binding protein
[B] Dehalococcoides sp. (strain CBDB1)DEHSC01221  UniProtKB/Swiss-Prot SSRP_DEHSC  SsrA-binding protein
[B] Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785)HERA201428  UniProtKB/TrEMBL A9B3C4  SsrA-binding protein
[B] Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2)THERP00235  UniProtKB/TrEMBL B9KXQ1  SsrA-binding protein
[B] Acaryochloris marina (strain MBIC 11017)ACAM100837  UniProtKB/Swiss-Prot SSRP_ACAM1  SsrA-binding protein
[B] Cyanothece (strain ATCC 51142)CYAA503226  UniProtKB/TrEMBL B1WY31  TmRNA-binding protein
[B] Cyanothece sp. (strain PCC 7425 / ATCC 29141)CYAP404501  UniProtKB/TrEMBL B8HMG1  SsrA-binding protein
[B] Gloeobacter violaceusGLOVI01489  UniProtKB/Swiss-Prot SSRP_GLOVI  tmRNA-binding protein
[B] Microcystis aeruginosa (strain NIES-843)MICAN04137  UniProtKB/Swiss-Prot SSRP_MICAN  SsrA-binding protein
[B] Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6)SYNP201330  UniProtKB/TrEMBL B1XLQ4  SsrA-binding protein
[B] Synechococcus sp. (strain CC9311)SYNS300121  UniProtKB/Swiss-Prot SSRP_SYNS3  SsrA-binding protein
[B] Synechococcus sp. (strain CC9605)SYNSC00111  UniProtKB/Swiss-Prot SSRP_SYNSC  SsrA-binding protein
[B] Synechococcus sp. (strain CC9902)SYNS900161  UniProtKB/Swiss-Prot SSRP_SYNS9  SmpB protein
[B] Synechococcus sp. (strain JA-2-3B'a(2-13))SYNJB01219  UniProtKB/Swiss-Prot SSRP_SYNJB  SsrA-binding protein identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086
[B] Synechococcus sp. (strain JA-3-3Ab)SYNJA01140  UniProtKB/Swiss-Prot SSRP_SYNJA  SsrA-binding protein identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086
[B] Synechococcus sp. (strain PCC 6301)SYNP602293  UniProtKB/Swiss-Prot SSRP_SYNP6  SsrA-binding protein tmRNA binding protein SmpB
[B] Synechococcus sp. (strain RCC307)SYNR300123  UniProtKB/Swiss-Prot SSRP_SYNR3  SsrA-binding protein
[B] Synechococcus sp. (strain WH7803)SYNPW00184  UniProtKB/Swiss-Prot SSRP_SYNPW  SsrA-binding protein
[B] Synechococcus sp. (strain WH8102)SYNPX00134  UniProtKB/Swiss-Prot SSRP_SYNPX  SsrA-binding protein
[B] Synechocystis sp. (strain PCC 6803)SYNY301851  UniProtKB/Swiss-Prot SSRP_SYNY3  SsrA-binding protein
[B] Thermosynechococcus elongatus (strain BP-1)THEEB01898  UniProtKB/Swiss-Prot SSRP_THEEB  SsrA-binding protein
[B] Anabaena variabilis (strain ATCC 29413 / PCC 7937)ANAVT02281  UniProtKB/Swiss-Prot SSRP_ANAVT  SmpB protein
[B] Anabaena sp. (strain PCC 7120)ANASP05018  UniProtKB/Swiss-Prot SSRP_ANASP  SsrA-binding protein
[B] Nostoc punctiforme (strain ATCC 29133 / PCC 73102)NOSP700422  UniProtKB/Swiss-Prot SSRP_NOSP7  SsrA-binding protein
[B] Trichodesmium erythraeum (strain IMS101)TRIEI01974  UniProtKB/Swiss-Prot SSRP_TRIEI  SsrA-binding protein
[B] Prochlorococcus marinusPROMA01772  UniProtKB/Swiss-Prot SSRP_PROMA  tmRNA-binding protein
[B] Prochlorococcus marinus (strain AS9601)PROMS01821  UniProtKB/Swiss-Prot SSRP_PROMS  tmRNA binding protein SmpB COG691 tmRNA-binding protein [Posttranslational modification, protein turnover, chaperones]
[B] Prochlorococcus marinus (strain MIT 9211)PROM401741  UniProtKB/Swiss-Prot SSRP_PROM4  TmRNA binding protein SmpB
[B] Prochlorococcus marinus (strain MIT 9215)PROM201885  UniProtKB/Swiss-Prot SSRP_PROM2  TmRNA binding protein SmpB
[B] Prochlorococcus marinus (strain MIT 9301)PROM001808  UniProtKB/Swiss-Prot SSRP_PROM0  tmRNA binding protein SmpB COG691 tmRNA-binding protein [Posttranslational modification, protein turnover, chaperones]
[B] Prochlorococcus marinus (strain MIT 9303)PROM300191  UniProtKB/Swiss-Prot SSRP_PROM3  TmRNA binding protein SmpB
[B] Prochlorococcus marinus (strain MIT 9312)PROM901858  UniProtKB/Swiss-Prot SSRP_PROM9  SsrA-binding protein
[B] Prochlorococcus marinus (strain MIT 9313)PROMM00155  UniProtKB/Swiss-Prot SSRP_PROMM  tmRNA binding protein SmpB
[B] Prochlorococcus marinus (strain MIT 9515)PROM501797  UniProtKB/Swiss-Prot SSRP_PROM5  tmRNA binding protein SmpB COG691 tmRNA-binding protein [Posttranslational modification, protein turnover, chaperones]
[B] Prochlorococcus marinus (strain NATL1A)PROM102041  UniProtKB/Swiss-Prot SSRP_PROM1  TmRNA binding protein SmpB
[B] Prochlorococcus marinus (strain NATL2A)PROMT02000  UniProtKB/Swiss-Prot SSRP_PROMT  SmpB protein
[B] Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4)PROMP01850  UniProtKB/Swiss-Prot SSRP_PROMP  SsrA-binding protein
[B] Deinococcus geothermalis (strain DSM 11300)DEIGD00810  UniProtKB/Swiss-Prot SSRP_DEIGD  SsrA-binding protein TIGRFAM: SsrA-binding protein: (3.5e-61) PFAM: SmpB protein: (3.3e-22) KEGG: dra:DR1468 small protein B, ev=3e-67, 88% identity
[B] Deinococcus radioduransDEIRA01433  UniProtKB/Swiss-Prot SSRP_DEIRA  SsrA-binding protein
[B] Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12)DICT601178  UniProtKB/TrEMBL B5YEV7  SsrA-binding protein
[B] Dictyoglomus turgidum (strain Z-1310 / DSM 6724)DICTD01283  UniProtKB/TrEMBL B8E0I0  SsrA-binding protein
[B] Bacillus amyloliquefaciens (strain FZB42)BACA202971  UniProtKB/Swiss-Prot SSRP_BACA2  SmpB
[B] Bacillus anthracisBACAN04929  UniProtKB/Swiss-Prot SSRP_BACAN  identified by match to PFAM protein family HMM PF01668 SsrA-binding protein
[B] Bacillus cereus (strain AH187)BACC705015  UniProtKB/Swiss-Prot SSRP_BACC7  SsrA-binding protein
[B] Bacillus cereus (strain ATCC 10987)BACC105187  UniProtKB/Swiss-Prot SSRP_BACC1  identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086 SsrA-binding protein
[B] Bacillus cereus (strain ATCC 14579 / DSM 31)BACCR04872  UniProtKB/Swiss-Prot SSRP_BACCR  SsrA-binding protein
[B] Bacillus cereus (strain G9842)BACC205094  UniProtKB/Swiss-Prot SSRP_BACC2  SsrA-binding protein
[B] Bacillus cereus (strain ZK)BACCZ04769  UniProtKB/Swiss-Prot SSRP_BACCZ  ssrA-binding protein
[B] Bacillus cereus subsp. cytotoxis (strain NVH 391-98)BACCN03489  UniProtKB/Swiss-Prot SSRP_BACCN  SsrA-binding protein
[B] Bacillus clausii (strain KSM-K16)BACSK02989   BAD65536.1  ssrA RNA (tmRNA)-binding protein
[B] Bacillus haloduransBACHD03487   NP_244419.1  small protein B
[B] Bacillus licheniformis (strain DSM 13 / ATCC 14580)BACLD03428  UniProtKB/Swiss-Prot SSRP_BACLD  InterProMatches:IPR000037; Molecular Function: RNA binding (GO:0003723), Biological Process: protein biosynthesis (GO:0006412) tmRNA-binding protein
[B] Bacillus pumilus (strain SAFR-032)BACP202977  UniProtKB/Swiss-Prot SSRP_BACP2  TmRNA-binding protein
[B] Bacillus subtilisBACSU03358  UniProtKB/Swiss-Prot SSRP_BACSU  SsrA-binding protein
[B] Bacillus thuringiensis (strain Al Hakam)BACAH04382  UniProtKB/Swiss-Prot SSRP_BACAH  ssrA-binding protein
[B] Bacillus thuringiensis (subsp. konkukian)BACHK04722  UniProtKB/Swiss-Prot SSRP_BACHK  ssrA-binding protein
[B] Bacillus weihenstephanensis (strain KBAB4)BACWK04799  UniProtKB/Swiss-Prot SSRP_BACWK  SsrA-binding protein
[B] Geobacillus kaustophilusGEOKA03013  UniProtKB/Swiss-Prot SSRP_GEOKA  ssrA RNA (tmRNA)-binding protein
[B] Geobacillus thermodenitrificans (strain NG80-2)GEOTN02932   ABO68342.1  TmRNA-binding protein
[B] Lysinibacillus sphaericus (strain C3-41)LYSSC00460  UniProtKB/Swiss-Prot SSRP_LYSSC  SsrA-binding protein
[B] Oceanobacillus iheyensisOCEIH02415  UniProtKB/Swiss-Prot SSRP_OCEIH  CDS_ID OB2426 ssrA-binding protein
[B] Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15)EXIS202331  UniProtKB/Swiss-Prot SSRP_EXIS2  SsrA-binding protein
[B] Listeria innocuaLISIN02514  UniProtKB/Swiss-Prot SSRP_LISIN  conserved hypothetical protein
[B] Listeria monocytogenesLISMO02444  UniProtKB/Swiss-Prot SSRP_LISMO  conserved hypothetical protein
[B] Listeria monocytogenes (serotype 4b / strain F2365)LISMF02395  UniProtKB/Swiss-Prot SSRP_LISMF  identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086 SsrA-binding protein
[B] Listeria monocytogenes serotype 4a (strain HCC23)LISMH00147  UniProtKB/Swiss-Prot SSRP_LISMH  SsrA-binding protein
[B] Listeria monocytogenes serotype 4b (strain Clip81459)LISMC02379  UniProtKB/Swiss-Prot SSRP_LISMC  Conserved hypothetical protein
[B] Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334)LISW602391  UniProtKB/Swiss-Prot SSRP_LISW6  SmpB protein
[B] Macrococcus caseolyticus (strain JCSC5402)MACCJ00529  UniProtKB/Swiss-Prot SSRP_MACCJ  SsrA-binding protein
[B] Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599)BREBN05161  UniProtKB/TrEMBL C0Z6K1  SsrA-binding protein
[B] Staphylococcus aureus (strain COL)STAAC00824  UniProtKB/Swiss-Prot SSRP_STAAC  identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086 SsrA-binding protein
[B] Staphylococcus aureus (strain JH1)STAA200791  UniProtKB/Swiss-Prot SSRP_STAA2  SsrA-binding protein TIGRFAM: SsrA-binding protein PFAM: SmpB protein KEGG: sav:SAV0782 ssrA-binding protein
[B] Staphylococcus aureus (strain JH9)STAA900776  UniProtKB/Swiss-Prot SSRP_STAA9  SsrA-binding protein TIGRFAM: SsrA-binding protein PFAM: SmpB protein
[B] Staphylococcus aureus (strain MRSA252)STAAR00811  UniProtKB/Swiss-Prot SSRP_STAAR  Similar to Bacillus subtilis putative tmRNA(ssrA)-binding protein SmpB SW:SSRP_BACSU (O32230) (156 aa) fasta scores: E(): 1.4e-34, 62.162% id in 148 aa, and to Enterococcus faecalis putative tmRNA-binding protein SmpB SW:SSRP_ENTFA (P43659) (154 aa) fasta scores: E(): 6e-33, 59.459% id in 148 aa putative tmRNA-binding protein
[B] Staphylococcus aureus (strain MSSA476)STAAS00750  UniProtKB/Swiss-Prot SSRP_STAAS  Ortholog of S. aureus MRSA252 (BX571856) SAR0837 putative tmRNA-binding protein
[B] Staphylococcus aureus (strain MW2)STAAW00743  UniProtKB/Swiss-Prot SSRP_STAAW  ssrA-binding protein
[B] Staphylococcus aureus (strain Mu3 / ATCC 700698)STAA100769  UniProtKB/Swiss-Prot SSRP_STAA1  SsrA-binding protein
[B] Staphylococcus aureus (strain Mu50 / ATCC 700699)STAAM00779  UniProtKB/Swiss-Prot SSRP_STAAM  ssrA-binding protein
[B] Staphylococcus aureus (strain N315)STAAN00749  UniProtKB/Swiss-Prot SSRP_STAAN  ssrA-binding protein
[B] Staphylococcus aureus (strain NCTC 8325)STAA800752  UniProtKB/Swiss-Prot SSRP_STAA8  SsrA-binding protein
[B] Staphylococcus aureus (strain Newman)STAAE00734  UniProtKB/Swiss-Prot SSRP_STAAE  TmRNA-binding protein
[B] Staphylococcus aureus (strain USA300 / TCH1516)STAAT00786  UniProtKB/Swiss-Prot SSRP_STAAT  tmRNA-binding protein SsrA-binding protein
[B] Staphylococcus aureus (strain USA300)STAA300742  UniProtKB/Swiss-Prot SSRP_STAA3  SsrA-binding protein identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086
[B] Staphylococcus aureus (strain bovine RF122)STAAB00732  UniProtKB/Swiss-Prot SSRP_STAAB  tmRNA and SsrA-binding protein
[B] Staphylococcus epidermidis (strain ATCC 12228)STAES00554  UniProtKB/Swiss-Prot SSRP_STAES  SsrA-binding protein
[B] Staphylococcus epidermidis (strain ATCC 35984 / RP62A)STAEQ00441  UniProtKB/Swiss-Prot SSRP_STAEQ  identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086 SsrA-binding protein
[B] Staphylococcus haemolyticus (strain JCSC1435)STAHJ02042  UniProtKB/Swiss-Prot SSRP_STAHJ  ssrA-binding protein
[B] Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229)STAS101903  UniProtKB/Swiss-Prot SSRP_STAS1  similar to gi|15923772|ref|NP_371306.1| [Staphylococcus aureus subsp. aureus Mu50], percent identity 93 in 154 aa, BLASTP E(): 2e-78 tmRNA-binding protein
[B] Anaerocellum thermophilum (strain DSM 6725 / Z-1320)ANATD00422  UniProtKB/Swiss-Prot SSRP_ANATD  SsrA-binding protein
[B] Alkaliphilus metalliredigens (strain QYMF)ALKMQ03297  UniProtKB/Swiss-Prot SSRP_ALKMQ  SsrA-binding protein
[B] Alkaliphilus oremlandii (strain OhILAs)ALKOO00952  UniProtKB/Swiss-Prot SSRP_ALKOO  SsrA-binding protein
[B] Clostridium acetobutylicumCLOAB00706  UniProtKB/Swiss-Prot SSRP_CLOAB  TmRNA-binding protein SmpB
[B] Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052)CLOB800629  UniProtKB/Swiss-Prot SSRP_CLOB8  SsrA-binding protein
[B] Clostridium botulinum (strain ATCC 19397 / Type A)CLOB100228  UniProtKB/Swiss-Prot SSRP_CLOB1  SsrA-binding protein
[B] Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A)CLOBH00232  UniProtKB/Swiss-Prot SSRP_CLOBH  SsrA-binding protein
[B] Clostridium botulinum (strain Langeland / NCTC 10281 / Type F)CLOBL00228  UniProtKB/Swiss-Prot SSRP_CLOBL  SsrA-binding protein
[B] Clostridium botulinum (strain Loch Maree / Type A3)CLOBM00230  UniProtKB/Swiss-Prot SSRP_CLOBM  SsrA-binding protein
[B] Clostridium botulinum (strain Okra / Type B1)CLOBK00239  UniProtKB/Swiss-Prot SSRP_CLOBK  SsrA-binding protein
[B] Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10)CLOCE00797  UniProtKB/Swiss-Prot SSRP_CLOCE  SsrA-binding protein TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; KEGG: cth:Cthe_2748 SsrA-binding protein
[B] Clostridium difficile (strain 630)CLOD603196  UniProtKB/Swiss-Prot SSRP_CLOD6  SsrA-binding protein
[B] Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680)CLOK503224  UniProtKB/Swiss-Prot SSRP_CLOK5  Putative uncharacterized protein
[B] Clostridium novyi (strain NT)CLONN00523  UniProtKB/Swiss-Prot SSRP_CLONN  SsrA-binding protein identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086
[B] Clostridium perfringensCLOPE01295  UniProtKB/Swiss-Prot SSRP_CLOPE  SsrA-binding protein
[B] Clostridium perfringens (strain ATCC 13124 / NCTC 8237)CLOP101467  UniProtKB/Swiss-Prot SSRP_CLOP1  SsrA-binding protein identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086
[B] Clostridium perfringens (strain SM101)CLOPS01252  UniProtKB/Swiss-Prot SSRP_CLOPS  SsrA-binding protein identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086
[B] Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)CLOPH02823  UniProtKB/Swiss-Prot SSRP_CLOPH  SsrA-binding protein
[B] Clostridium tetaniCLOTE00301  UniProtKB/Swiss-Prot SSRP_CLOTE  SsrA-binding protein
[B] Clostridium thermocellum (strain ATCC 27405 / DSM 1237)CLOTH02617  UniProtKB/Swiss-Prot SSRP_CLOTH  SsrA-binding protein
[B] Finegoldia magna (strain ATCC 29328)FINM200653  UniProtKB/TrEMBL B0S131  SsrA-binding protein
[B] Heliobacterium modesticaldum (strain ATCC 51547 / Ice1)HELMI00605  UniProtKB/TrEMBL B0TGJ4  Ssra-binding protein
[B] Desulforudis audaxviator (strain MP104C)DESAP00242  UniProtKB/Swiss-Prot SSRP_DESAP  SsrA-binding protein
[B] Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008)CARHZ00289  UniProtKB/Swiss-Prot SSRP_CARHZ  identified by similarity to GP:20150724; match to protein family HMM PF01668; match to protein family HMM TIGR00086 SsrA-binding protein
[B] Desulfitobacterium hafniense (strain Y51)DESHY04790  UniProtKB/Swiss-Prot SSRP_DESHY  hypothetical protein similarity to COG0691 tmRNA-binding protein(Evalue: 8E-56)
[B] Desulfotomaculum reducens (strain MI-1)DESRM02876  UniProtKB/Swiss-Prot SSRP_DESRM  SsrA-binding protein
[B] Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI)PELTS02670  UniProtKB/Swiss-Prot SSRP_PELTS  TmRNA-binding protein
[B] Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903)CALS801009  UniProtKB/Swiss-Prot SSRP_CALS8  SsrA-binding protein
[B] Syntrophomonas wolfei subsp. wolfei (strain Goettingen)SYNWW00265  UniProtKB/Swiss-Prot SSRP_SYNWW  SsrA-binding protein
[B] Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562)HALOH01541  UniProtKB/Swiss-Prot SSRP_HALOH  SsrA-binding protein
[B] Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF)NATTJ01916  UniProtKB/TrEMBL B2A6M5  SsrA-binding protein
[B] Moorella thermoacetica (strain ATCC 39073)MOOTA00270  UniProtKB/Swiss-Prot SSRP_MOOTA  SsrA-binding protein
[B] Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E)THEP301294  UniProtKB/Swiss-Prot SSRP_THEP3  SsrA-binding protein
[B] Thermoanaerobacter sp. (strain X514)THEPX01296  UniProtKB/Swiss-Prot SSRP_THEPX  SsrA-binding protein
[B] Thermoanaerobacter tengcongensisTHETN00903  UniProtKB/Swiss-Prot SSRP_THETN  Best Blastp hit = gi|3334327|sp|O32230|SSRP_BACSU SSRA-BINDING PROTEIN gi|7448180|pir||F70027 conserved hypothetical protein yvaI - Bacillus subtilis gi|2635873|emb|CAB15365.1| (Z99121) similar to hypothetical proteins [Bacillus subtilis], score 184, E-value 4.00E-46 tmRNA-binding protein
[B] Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT)COPPD00456  UniProtKB/Swiss-Prot SSRP_COPPD  SsrA-binding protein
[B] Enterococcus faecalisENTFA02426  UniProtKB/Swiss-Prot SSRP_ENTFA  SsrA-binding protein
[B] Lactobacillus acidophilusLACAC00432  UniProtKB/Swiss-Prot SSRP_LACAC  COG0691 tmRNA-binding protein ssrA-binding protein
[B] Lactobacillus brevis (strain ATCC 367 / JCM 1170)LACBA00628  UniProtKB/Swiss-Prot SSRP_LACBA  tmRNA-binding protein
[B] Lactobacillus casei (strain ATCC 334)LACC300872  UniProtKB/Swiss-Prot SSRP_LACC3  tmRNA-binding protein
[B] Lactobacillus casei (strain BL23)LACCB01065  UniProtKB/Swiss-Prot SSRP_LACCB  SsrA-binding protein
[B] Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081)LACDA01686  UniProtKB/Swiss-Prot SSRP_LACDA  SsrA-binding protein
[B] Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365)LACDB01417  UniProtKB/Swiss-Prot SSRP_LACDB  tmRNA-binding protein
[B] Lactobacillus fermentum (strain IFO 3956 / LMG 18251)LACF300369  UniProtKB/Swiss-Prot SSRP_LACF3  Putative uncharacterized protein
[B] Lactobacillus gasseri (strain ATCC 33323 / DSM 20243)LACGA01188  UniProtKB/Swiss-Prot SSRP_LACGA  tmRNA-binding protein
[B] Lactobacillus helveticus (strain DPC 4571)LACH400378  UniProtKB/Swiss-Prot SSRP_LACH4  SsrA-binding protein
[B] Lactobacillus johnsoniiLACJO00715  UniProtKB/Swiss-Prot SSRP_LACJO  SsrA-binding protein
[B] Lactobacillus plantarumLACPL00683  UniProtKB/Swiss-Prot SSRP_LACPL  SSRA RNA binding protein
[B] Lactobacillus reuteri (strain DSM 20016)LACRD00380  UniProtKB/Swiss-Prot SSRP_LACRD  SsrA-binding protein
[B] Lactobacillus reuteri (strain JCM 1112)LACRJ00381  UniProtKB/Swiss-Prot SSRP_LACRJ  SsrA-binding protein
[B] Lactobacillus sakei subsp. sakei (strain 23K)LACSS01394  UniProtKB/Swiss-Prot SSRP_LACSS  t/mRNA binding protein (SsrA RNA binding protein)
[B] Lactobacillus salivarius subsp. salivarius (strain UCC118)LACS101132  UniProtKB/Swiss-Prot SSRP_LACS1  SsrA-binding protein COG0691 [O] tmRNA-binding protein
[B] Pediococcus pentosaceus (strain ATCC 25745 / 183-1w)PEDPA00449  UniProtKB/Swiss-Prot SSRP_PEDPA  tmRNA-binding protein
[B] Leuconostoc citreum (strain KM20)LEUCK00404  UniProtKB/TrEMBL B1MXI9  SsrA-binding protein
[B] Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523)LEUMM01639  UniProtKB/Swiss-Prot SSRP_LEUMM  tmRNA-binding protein
[B] Oenococcus oeni (strain BAA-331 / PSU-1)OENOB01285  UniProtKB/Swiss-Prot SSRP_OENOB  tmRNA-binding protein
[B] Lactococcus lactis subsp. cremoris (strain MG1363)LACLM01802  UniProtKB/Swiss-Prot SSRP_LACLM  SmpB protein
[B] Lactococcus lactis subsp. cremoris (strain SK11)LACLS01673  UniProtKB/Swiss-Prot SSRP_LACLS  tmRNA-binding protein
[B] Lactococcus lactis subsp. lactisLACLA01685  UniProtKB/Swiss-Prot SSRP_LACLA  SsrA-binding protein
[B] Streptococcus agalactiae (serotype III)STRA301448  UniProtKB/Swiss-Prot SSRP_STRA3  Similar to small protein SmpB Unknown
[B] Streptococcus agalactiae (serotype V)STRA501427  UniProtKB/Swiss-Prot SSRP_STRA5  identified by match to PFAM protein family HMM PF01668 SsrA-binding protein
[B] Streptococcus agalactiae serotype IaSTRA101376  UniProtKB/Swiss-Prot SSRP_STRA1  identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086 SsrA-binding protein
[B] Streptococcus equi subsp. equi (strain 4047)STRE401448  UniProtKB/Swiss-Prot SSRP_STRE4  SsrA-binding protein
[B] Streptococcus equi subsp. zooepidemicus (strain H70)STRS700541  UniProtKB/Swiss-Prot SSRP_STRS7  SsrA-binding protein Ortholog of S. equi 4047 (FM204883) SEQ1602
[B] Streptococcus equi subsp. zooepidemicus (strain MGCS10565)STREM01343  UniProtKB/Swiss-Prot SSRP_STREM  SsrA-binding protein SmpB
[B] Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288)STRGC00699  UniProtKB/Swiss-Prot SSRP_STRGC  SsrA-binding protein
[B] Streptococcus mutansSTRMU01444  UniProtKB/Swiss-Prot SSRP_STRMU  Best Blastp Hit: gb|AAC23745.1| (AF052209) VacB homolog [Streptococcus pneumoniae] putative SsrA-binding protein homolog
[B] Streptococcus pneumoniaeSTRPN00896  UniProtKB/Swiss-Prot SSRP_STRPN  identified by match to TIGR protein family HMM TIGR00086 SsrA-binding protein
[B] Streptococcus pneumoniae (strain ATCC BAA-255 / R6)STRR600876  UniProtKB/Swiss-Prot SSRP_STRR6  Small protein B
[B] Streptococcus pneumoniae (strain CGSP14)STRPS00936  UniProtKB/Swiss-Prot SSRP_STRPS  SsrA-binding protein
[B] Streptococcus pneumoniae (strain Hungary19A-6)STRPI00984  UniProtKB/Swiss-Prot SSRP_STRPI  SsrA-binding protein
[B] Streptococcus pneumoniae (strain JJA)STRZJ00865  UniProtKB/Swiss-Prot SSRP_STRZJ  SsrA-binding protein
[B] Streptococcus pneumoniae (strain P1031)STRZP00895  UniProtKB/Swiss-Prot SSRP_STRZP  SsrA-binding protein
[B] Streptococcus pneumoniae serotype 19F (strain G54)STRP400879  UniProtKB/Swiss-Prot SSRP_STRP4  SsrA-binding protein
[B] Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466)STRP200809  UniProtKB/Swiss-Prot SSRP_STRP2  SsrA-binding protein equivalent gene in S.pneumoniae TIGR4 = SP0976; equivalent gene in S.pneumoniae R6 = spr0879; identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086
[B] Streptococcus pyogenes (serotype M18)STRP800421  UniProtKB/Swiss-Prot SSRP_STRP8  best blastp match gb|AAK33504.1| (AE006508) conserved hypothetical protein [Streptococcus pyogenes M1 GAS] conserved hypothetical protein
[B] Streptococcus pyogenes (serotype M3)STRP300352  UniProtKB/Swiss-Prot SSRP_STRP3  best non-GAS blastp hit: sp|Q9CEW2|SSRP_LACLA SsrA-binding protein, and gb|AAK05820.1|AE006402_8 (AE006402) tmRNA-binding protein SmpB [Lactococcus lactis subsp. lactis] putative tmRNA-binding protein
[B] Streptococcus pyogenes (serotype M6)STRP600439  UniProtKB/Swiss-Prot SSRP_STRP6  SsrA-binding protein
[B] Streptococcus pyogenes serotype M1STRP100910  UniProtKB/Swiss-Prot SSRP_STRP1  SsrA-binding protein
[B] Streptococcus pyogenes serotype M12 (strain MGAS2096)STRPB00429  UniProtKB/Swiss-Prot SSRP_STRPB  SsrA-binding protein
[B] Streptococcus pyogenes serotype M12 (strain MGAS9429)STRPC00408  UniProtKB/Swiss-Prot SSRP_STRPC  ssrA-binding protein
[B] Streptococcus pyogenes serotype M2 (strain MGAS10270)STRPD00411  UniProtKB/Swiss-Prot SSRP_STRPD  SsrA-binding protein
[B] Streptococcus pyogenes serotype M28STRPM00398  UniProtKB/Swiss-Prot SSRP_STRPM  ssrA-binding protein
[B] Streptococcus pyogenes serotype M4 (strain MGAS10750)STRPF00420  UniProtKB/Swiss-Prot SSRP_STRPF  SsrA-binding protein
[B] Streptococcus pyogenes serotype M49 (strain NZ131)STRPZ00392  UniProtKB/Swiss-Prot SSRP_STRPZ  SsrA-binding protein
[B] Streptococcus pyogenes serotype M5 (strain Manfredo)STRPG01422  UniProtKB/Swiss-Prot SSRP_STRPG  SsrA-binding protein
[B] Streptococcus sanguinis (strain SK36)STRSV01518  UniProtKB/Swiss-Prot SSRP_STRSV  VacB-like protein, putative
[B] Streptococcus suis (strain 05ZYH33)STRSY01375  UniProtKB/Swiss-Prot SSRP_STRSY  TmRNA-binding protein
[B] Streptococcus suis (strain 98HAH33)STRS201391  UniProtKB/Swiss-Prot SSRP_STRS2  TmRNA-binding protein
[B] Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311)STRT200599  UniProtKB/Swiss-Prot SSRP_STRT2  tmRNA-binding protein SsrA
[B] Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9)STRTD00531  UniProtKB/Swiss-Prot SSRP_STRTD  tmRNA-binding protein
[B] Streptococcus thermophilus (strain CNRZ 1066)STRT100599  UniProtKB/Swiss-Prot SSRP_STRT1  tmRNA-binding protein SsrA
[B] Fusobacterium nucleatum subsp. nucleatumFUSNN01168  UniProtKB/Swiss-Prot SSRP_FUSNN  SsrA-binding protein
[B] Rhodopirellula balticaRHOBA02675   NP_866360.1  PMID: 10360571 best DB hits: BLAST: swissprot:P56944; SSRP_THEMA SSRA-BINDING PROTEIN; E=4e-32 gb:AAF04322.1; (AF065159) SmpB [Bradyrhizobium japonicum]; E=9e-32 swissprot:P74355; SSRP_SYNY3 SSRA-BINDING PROTEIN ----- pir:; E=2e-30 COG: TM0254; COG0691 tmRNA-binding protein; E=3e-33 PFAM: PF01668; SmpB protein; E=1.1e-26 ssrA-binding protein
[B] Caulobacter crescentusCAUCR01183  UniProtKB/Swiss-Prot SSRP_CAUCR  SsrA-binding protein
[B] Caulobacter sp. (strain K31)CAUSK03024  UniProtKB/Swiss-Prot SSRP_CAUSK  SsrA-binding protein
[B] Phenylobacterium zucineum (strain HLK1)PHEZH01880  UniProtKB/TrEMBL B4RCW3  Small protein B
[B] Bartonella bacilliformis (strain ATCC 35685 / KC583)BARBK00440  UniProtKB/Swiss-Prot SSRP_BARBK  SsrA-binding protein
[B] Bartonella henselaeBARHE00487  UniProtKB/Swiss-Prot SSRP_BARHE  SSRA-binding protein
[B] Bartonella quintanaBARQU00411  UniProtKB/Swiss-Prot SSRP_BARQU  SSRA-binding protein
[B] Bartonella tribocorum (strain CIP 105476 / IBS 506)BART100643  UniProtKB/Swiss-Prot SSRP_BART1  SsrA-binding protein SsrA/tmRNA-binding protein; binds specifically to the ssrA RNA (tmRNA) ,InterPro; SmpB protein hypothetical protein
[B] Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712)BEII901829  UniProtKB/Swiss-Prot SSRP_BEII9  SsrA-binding protein
[B] Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906)METSB00831  UniProtKB/Swiss-Prot SSRP_METSB  SsrA-binding protein
[B] Bradyrhizobium japonicumBRAJA05014  UniProtKB/Swiss-Prot SSRP_BRAJA  SsrA-binding protein
[B] Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)BRASB04382  UniProtKB/Swiss-Prot SSRP_BRASB  Trans-translation protein, binds tmRNA and tRNA
[B] Bradyrhizobium sp. (strain ORS278)BRASO04227  UniProtKB/Swiss-Prot SSRP_BRASO  Trans-translation protein, binds tmRNA and tRNA
[B] Nitrobacter hamburgensis (strain X14 / DSM 10229)NITHX02123  UniProtKB/Swiss-Prot SSRP_NITHX  SsrA-binding protein
[B] Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391)NITWN01830  UniProtKB/Swiss-Prot SSRP_NITWN  SmpB protein
[B] Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5)OLICO01804  UniProtKB/Swiss-Prot SSRP_OLICO  SsrA-binding protein
[B] Rhodopseudomonas palustrisRHOPA02680  UniProtKB/Swiss-Prot SSRP_RHOPA  small protein B
[B] Rhodopseudomonas palustris (strain BisA53)RHOP502986  UniProtKB/Swiss-Prot SSRP_RHOP5  SsrA-binding protein TIGRFAM: SsrA-binding protein PFAM: SmpB protein KEGG: rpd:RPD_2642 SsrA-binding protein
[B] Rhodopseudomonas palustris (strain BisB18)RHOPB02589  UniProtKB/Swiss-Prot SSRP_RHOPB  SsrA-binding protein
[B] Rhodopseudomonas palustris (strain BisB5)RHOPS02625  UniProtKB/Swiss-Prot SSRP_RHOPS  SsrA-binding protein
[B] Rhodopseudomonas palustris (strain HaA2)RHOP202593  UniProtKB/Swiss-Prot SSRP_RHOP2  SsrA-binding protein
[B] Rhodopseudomonas palustris (strain TIE-1)RHOPT02906  UniProtKB/Swiss-Prot SSRP_RHOPT  SsrA-binding protein
[B] Brucella abortusBRUAB00615  UniProtKB/Swiss-Prot SSRP_BRUAB  similar to BR0647, SsrA-binding protein SmpB, SsrA-binding protein
[B] Brucella abortus (strain 2308)BRUA200661  UniProtKB/Swiss-Prot SSRP_BRUA2  SmpB protein
[B] Brucella abortus (strain S19)BRUA100589  UniProtKB/Swiss-Prot SSRP_BRUA1  SmpB protein
[B] Brucella canis (strain ATCC 23365 / NCTC 10854)BRUC200621  UniProtKB/Swiss-Prot SSRP_BRUC2  SsrA-binding protein
[B] Brucella melitensisBRUME01290  UniProtKB/Swiss-Prot SSRP_BRUME  SsrA-binding protein
[B] Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512)BRUO200571  UniProtKB/Swiss-Prot SSRP_BRUO2  SsrA-binding protein
[B] Brucella suisBRUSU00616  UniProtKB/Swiss-Prot SSRP_BRUSU  identified by match to PFAM protein family HMM PF01668 SsrA-binding protein
[B] Brucella suis (strain ATCC 23445 / NCTC 10510)BRUSI00634  UniProtKB/Swiss-Prot SSRP_BRUSI  SsrA-binding protein GO_function: RNA binding [GO ID 0003723]; GO_process: regulation of translational fidelity [GO ID 0006450]
[B] Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168)OCHA402608  UniProtKB/Swiss-Prot SSRP_OCHA4  SsrA-binding protein
[B] Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688)METC403349  UniProtKB/Swiss-Prot SSRP_METC4  SsrA-binding protein TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; KEGG: mex:Mext_3192 SsrA-binding protein
[B] Methylobacterium extorquens (strain PA1)METEP03143  UniProtKB/Swiss-Prot SSRP_METEP  SsrA-binding protein
[B] Methylobacterium nodulans (strain ORS2060 / LMG 21967)METNO01397  UniProtKB/Swiss-Prot SSRP_METNO  SsrA-binding protein
[B] Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001)METPB03329  UniProtKB/Swiss-Prot SSRP_METPB  SsrA-binding protein
[B] Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831)METRJ01853  UniProtKB/Swiss-Prot SSRP_METRJ  SsrA-binding protein
[B] Methylobacterium sp. (strain 4-46)METS400665  UniProtKB/Swiss-Prot SSRP_METS4  SsrA-binding protein
[B] Mesorhizobium sp. (strain BNC1)MESSB00934  UniProtKB/Swiss-Prot SSRP_MESSB  SsrA-binding protein TIGRFAM: SsrA-binding protein PFAM: SmpB protein KEGG: mlo:mlr7747 SsrA-binding protein
[B] Rhizobium lotiRHILO06078  UniProtKB/Swiss-Prot SSRP_RHILO  SSRA-BINDING PROTEIN
[B] Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966)PARL102790  UniProtKB/Swiss-Prot SSRP_PARL1  SsrA-binding protein
[B] Agrobacterium radiobacter (strain K84 / ATCC BAA-868)AGRRK01185  UniProtKB/Swiss-Prot SSRP_AGRRK  SsrA-binding (TmRNA-binding) protein
[B] Agrobacterium tumefaciens (strain C58 / ATCC 33970)AGRT501005  UniProtKB/Swiss-Prot SSRP_AGRT5  SsrA-binding protein
[B] Rhizobium etli (strain CFN 42 / ATCC 51251)RHIEC01348  UniProtKB/Swiss-Prot SSRP_RHIEC  ssrA-binding (tmRNA-binding) protein similar to smpB (SMc02405) [Sinorhizobium meliloti] and smpB (Atu1025) [Agrobacterium tumefaciens str. C58] Similar to entrez-protein:Q92R54 Putative location:bacterial cytoplasm Psort-Score: 0.2343; go_function: RNA binding [goid 0003723]; go_process: protein biosynthesis [goid 0006412]
[B] Rhizobium etli (strain CIAT 652)RHIE601430  UniProtKB/Swiss-Prot SSRP_RHIE6  SsrA-binding (TmRNA-binding) protein
[B] Rhizobium leguminosarum bv. trifolii (strain WSM2304)RHILW00977  UniProtKB/Swiss-Prot SSRP_RHILW  SsrA-binding protein
[B] Rhizobium leguminosarum bv. viciae (strain 3841)RHIL301508  UniProtKB/Swiss-Prot SSRP_RHIL3  putative RNA binding protein Similar to N-terminus to codon 153 of Streptococcus pneumoniae VacB homolog. UniProt:O85201_STRPN (EMBL:AF052209) (441 aa), and to entire protein of Agrobacterium tumefaciens (strain C58/ATCC 33970) SmpB SsrA-binding protein. UniProt:SSRP_AGRT5 (EMBL:AE008033) (160 aa) similarity:fasta; with=UniProt:O85201_STRPN (EMBL:AF052209); Streptococcus pneumoniae.; VacB homolog.; length=441; id 50.685; 146 aa overlap; query 4-149; subject 7-151 similarity:fasta; with=UniProt:SSRP_AGRT5 (EMBL:AE008033); Agrobacterium tumefaciens (strain C58/ATCC 33970).; smpB; SsrA-binding protein.; length=160; id 87.333; 150 aa overlap; query 1-150; subject 9-158
[B] Rhizobium melilotiRHIME01047  UniProtKB/Swiss-Prot SSRP_RHIME  Product confidence : hypothetical Gene name confidence : putative predicted by Codon_usage predicted by Homology predicted by FrameD CONSERVED HYPOTHETICAL PROTEIN
[B] Sinorhizobium medicae (strain WSM419)SINMW00668  UniProtKB/Swiss-Prot SSRP_SINMW  SsrA-binding protein
[B] Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)AZOC501239  UniProtKB/Swiss-Prot SSRP_AZOC5  SsrA-binding protein
[B] Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)XANP203735  UniProtKB/Swiss-Prot SSRP_XANP2  SsrA-binding protein
[B] Hyphomonas neptunium (strain ATCC 15444)HYPNA02739  UniProtKB/Swiss-Prot SSRP_HYPNA  SsrA-binding protein
[B] Maricaulis maris (strain MCS10)MARMM01577  UniProtKB/Swiss-Prot SSRP_MARMM  SsrA-binding protein
[B] Dinoroseobacter shibae (strain DFL 12)DINSH00147  UniProtKB/Swiss-Prot SSRP_DINSH  SsrA-binding protein
[B] Jannaschia sp. (strain CCS1)JANSC00031  UniProtKB/Swiss-Prot SSRP_JANSC  SsrA-binding protein
[B] Paracoccus denitrificans (strain Pd 1222)PARDP00612  UniProtKB/Swiss-Prot SSRP_PARDP  SsrA-binding protein TIGRFAM: SsrA-binding protein PFAM: SmpB protein KEGG: jan:Jann_0031 SsrA-binding protein
[B] Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)RHOS402495  UniProtKB/Swiss-Prot SSRP_RHOS4  SsRA/tmRNA-binding protein homologous to SmpB from Bradyrhizobium japonicum. Citation: DNA Res. 9 (6), 189-197 (2002) SmpB protein
[B] Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3)RHOS500121  UniProtKB/Swiss-Prot SSRP_RHOS5  SsrA-binding protein
[B] Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)RHOS102506  UniProtKB/Swiss-Prot SSRP_RHOS1  SsrA-binding protein TIGRFAM: SsrA-binding protein PFAM: SmpB protein KEGG: rsp:RSP_0883 SsrA-binding protein
[B] Rhodobacter sphaeroides (strain KD131 / KCTC 12085)RHOSK02233  UniProtKB/Swiss-Prot SSRP_RHOSK  SsrA-binding protein
[B] Silicibacter pomeroyiSILPO03705  UniProtKB/Swiss-Prot SSRP_SILPO  identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086 SsrA-binding protein
[B] Silicibacter sp. (strain TM1040)SILST02472  UniProtKB/Swiss-Prot SSRP_SILST  SsrA-binding protein TIGRFAM: SsrA-binding protein: (3.7e-70) PFAM: SmpB protein: (7.5e-33) KEGG: sil:SPO3806 SsrA-binding protein, ev=3e-75, 85% identity
[B] Acidiphilium cryptum (strain JF-5)ACICJ01866  UniProtKB/Swiss-Prot SSRP_ACICJ  SsrA-binding protein
[B] Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5)GLUDA01822  UniProtKB/Swiss-Prot SSRP_GLUDA  Putative SsrA-binding protein
[B] Gluconobacter oxydansGLUOX00058  UniProtKB/Swiss-Prot SSRP_GLUOX  SsrA-binding protein
[B] Granulobacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1)GRABC01196  UniProtKB/Swiss-Prot SSRP_GRABC  SsrA-binding protein
[B] Magnetospirillum magneticum (strain AMB-1 / ATCC 700264)MAGMM02501   BAE51348.1  tmRNA-binding protein
[B] Rhodospirillum centenum (strain ATCC 51521 / SW)RHOCS01453  UniProtKB/TrEMBL B6IN12  SsrA-binding protein SsrA
[B] Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255)RHORT01857  UniProtKB/Swiss-Prot SSRP_RHORT  SmpB protein
[B] Anaplasma marginale (strain St. Maries)ANAMM00806  UniProtKB/Swiss-Prot SSRP_ANAMM  COG0691 SmpB tmRNA-binding protein; go_process: 0006412 small protein B homolog
[B] Anaplasma phagocytophilum (strain HZ)ANAPZ01167  UniProtKB/Swiss-Prot SSRP_ANAPZ  SsrA-binding protein identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086
[B] Ehrlichia canis (strain Jake)EHRCJ00086  UniProtKB/Swiss-Prot SSRP_EHRCJ  SmpB protein
[B] Ehrlichia chaffeensis (strain Arkansas)EHRCR00128  UniProtKB/Swiss-Prot SSRP_EHRCR  SsrA-binding protein identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086
[B] Ehrlichia ruminantium (strain Gardel)EHRRG00071  UniProtKB/Swiss-Prot SSRP_EHRRG  Similar to sp|Q92R54|SSRP_RHIME sp|Q8YG61|SSRP_BRUME sp|Q985B9|SSRP_RHILO sp|Q92I24|SSRP_RICCN; Ortholog to ERWE_CDS_00740 SsrA-binding protein
[B] Ehrlichia ruminantium (strain Welgevonden)EHRRW00074  UniProtKB/Swiss-Prot SSRP_EHRRW  Similar to sp|Q92R54|SSRP_RHIME sp|Q8YG61|SSRP_BRUME sp|Q985B9|SSRP_RHILO sp|Q92I24|SSRP_RICCN; Ortholog to ERGA_CDS_00710 SsrA-binding protein
[B] Neorickettsia sennetsu (strain Miyayama)NEOSM00779  UniProtKB/Swiss-Prot SSRP_NEOSM  SsrA-binding protein identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086
[B] Orientia tsutsugamushi (strain Boryong)ORITB00336  UniProtKB/Swiss-Prot SSRP_ORITB  SsrA-RNA-binding protein
[B] Orientia tsutsugamushi (strain Ikeda)ORITI00072  UniProtKB/Swiss-Prot SSRP_ORITI  Small protein B homolog
[B] Rickettsia akari (strain Hartford)RICAH00588  UniProtKB/Swiss-Prot SSRP_RICAH  SsrA-binding protein
[B] Rickettsia bellii (strain OSU 85-389)RICB800865  UniProtKB/Swiss-Prot SSRP_RICB8  SsrA-binding protein
[B] Rickettsia bellii (strain RML369-C)RICBR00722  UniProtKB/Swiss-Prot SSRP_RICBR  tmRNA-binding protein
[B] Rickettsia canadensis (strain McKiel)RICCK00621  UniProtKB/Swiss-Prot SSRP_RICCK  SsrA-binding protein
[B] Rickettsia felisRICFE00634  UniProtKB/Swiss-Prot SSRP_RICFE  tmRNA-binding protein
[B] Rickettsia massiliae (strain Mtu5)RICM500437   ABV84790.1  TmRNA-binding protein
[B] Rickettsia prowazekiiRICPR00414  UniProtKB/Swiss-Prot SSRP_RICPR  SMALL PROTEIN B HOMOLOG (smpB)
[B] Rickettsia rickettsii (strain Iowa)RICRO00636  UniProtKB/Swiss-Prot SSRP_RICRO  SsrA-binding protein
[B] Rickettsia rickettsii (strain Sheila Smith)RICRS00605  UniProtKB/Swiss-Prot SSRP_RICRS  SsrA-binding protein
[B] Rickettsia typhiRICTY00403  UniProtKB/Swiss-Prot SSRP_RICTY  tmRNA-binding protein SmpB
[B] Rickettsia conoriiRICCN00596  UniProtKB/Swiss-Prot SSRP_RICCN  SsrA-binding protein
[B] Wolbachia pipientis subsp. Culex pipiens (strain wPip)WOLPP00407  UniProtKB/Swiss-Prot SSRP_WOLPP  SsrA-binding protein
[B] Wolbachia pipientis wMelWOLPM00668  UniProtKB/Swiss-Prot SSRP_WOLPM  Identified by match to TIGR00086 protein family HMM TIGR00086; match to PF01668 protein family HMM PF01668 SsrA-binding protein
[B] Wolbachia sp. (subsp. Brugia malayi) (strain TRS)WOLTR00080  UniProtKB/Swiss-Prot SSRP_WOLTR  tmRNA-binding protein
[B] Wolbachia sp. subsp. Drosophila simulans (strain wRi)WOLWR00428  UniProtKB/Swiss-Prot SSRP_WOLWR  SsrA-binding protein
[B] Pelagibacter ubiquePELUB01041  UniProtKB/Swiss-Prot SSRP_PELUB  smpB protein
[B] Erythrobacter litoralis (strain HTCC2594)ERYLH01541  UniProtKB/Swiss-Prot SSRP_ERYLH  small protein B COG0691 tmRNA-binding protein
[B] Novosphingobium aromaticivorans (strain DSM 12444)NOVAD01435  UniProtKB/Swiss-Prot SSRP_NOVAD  SsrA-binding protein
[B] Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273)SPHWW00511  UniProtKB/Swiss-Prot SSRP_SPHWW  SsrA-binding protein
[B] Sphingopyxis alaskensisSPHAL01708  UniProtKB/Swiss-Prot SSRP_SPHAL  SsrA-binding protein
[B] Zymomonas mobilisZYMMO00715  UniProtKB/Swiss-Prot SSRP_ZYMMO  COG0691 small protein B
[B] Bordetella avium (strain 197N)BORA101739  UniProtKB/Swiss-Prot SSRP_BORA1  SsrA-binding protein
[B] Bordetella bronchisepticaBORBR02612  UniProtKB/Swiss-Prot SSRP_BORBR  ortholog of Bordetella pertussis (BX470248) BP1442 SsrA-binding protein
[B] Bordetella parapertussisBORPA01539  UniProtKB/Swiss-Prot SSRP_BORPA  ortholog of Bordetella pertussis (BX470248) BP1442 SsrA-binding protein
[B] Bordetella pertussisBORPE01313  UniProtKB/Swiss-Prot SSRP_BORPE  Similar to Escherichia coli ssrA-binding protein SmpB or SmqB or B2620 or Z3913 or Ecs3482 SW:SSRP_ECOLI (P32052) (159 aa) fasta scores: E(): 2e-26, 45.94% id in 148 aa, and to Neisseria meningitidis SsrA-binding protein SmpB or Nma1726 or Nmb1526 SW:SSRP_NEIMA (Q51111) (148 aa) fasta scores: E(): 2.3e-35, 61.64% id in 146 aa SsrA-binding protein
[B] Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448)BORPD02454  UniProtKB/TrEMBL A9INP2  SsrA-binding protein
[B] Burkholderia ambifaria (strain MC40-6)BURA401875  UniProtKB/TrEMBL B1YS54  SsrA-binding protein
[B] Burkholderia cenocepacia (strain AU 1054)BURCA06000  UniProtKB/Swiss-Prot SSRP_BURCA  SsrA-binding protein
[B] Burkholderia cenocepacia (strain HI2424)BURCH01986  UniProtKB/Swiss-Prot SSRP_BURCH  SsrA-binding protein TIGRFAM: SsrA-binding protein PFAM: SmpB protein KEGG: bcn:Bcen_6078 SsrA-binding protein
[B] Burkholderia cenocepacia (strain MC0-3)BURCC01993  UniProtKB/TrEMBL B1JUD0  SsrA-binding protein
[B] Burkholderia cepacia (strain ATCC 53795 / AMMD)BURCM02021  UniProtKB/Swiss-Prot SSRP_BURCM  SsrA-binding protein TIGRFAM: SsrA-binding protein PFAM: SmpB protein KEGG: bur:Bcep18194_A5309 SmpB protein
[B] Burkholderia cepacia (strain J2315 / LMG 16656)BURCJ01972  UniProtKB/TrEMBL B4EC78  SSRA-binding protein
[B] Burkholderia multivorans (strain ATCC 17616 / 249)BURM102182  UniProtKB/TrEMBL A9AIN4  SsrA-binding protein
[B] Burkholderia sp. (strain 383)BURS302116  UniProtKB/Swiss-Prot SSRP_BURS3  SmpB protein
[B] Burkholderia vietnamiensis (strain G4 / LMG 22486)BURVG01833  UniProtKB/Swiss-Prot SSRP_BURVG  SsrA-binding protein
[B] Burkholderia malleiBURMA01237  UniProtKB/Swiss-Prot SSRP_BURMA  SsrA-binding protein
[B] Burkholderia mallei (strain NCTC 10229)BURM903084  UniProtKB/Swiss-Prot SSRP_BURM9  SsrA-binding protein
[B] Burkholderia mallei (strain NCTC 10247)BURM701218  UniProtKB/Swiss-Prot SSRP_BURM7  SsrA-binding protein
[B] Burkholderia mallei (strain SAVP1)BURMS01907  UniProtKB/Swiss-Prot SSRP_BURMS  SsrA-binding protein
[B] Burkholderia phymatum (strain DSM 17167 / STM815)BURP801302  UniProtKB/TrEMBL B2JIA6  SsrA-binding protein
[B] Burkholderia phytofirmans (strain DSM 17436 / PsJN)BURPP02357  UniProtKB/TrEMBL B2T5H4  SsrA-binding protein
[B] Burkholderia pseudomalleiBURPS02143  UniProtKB/Swiss-Prot SSRP_BURPS  Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 SSRA-binding protein SmpB or SmqB or b2620 or c3142 or z3913 or ecs3482 SWALL:SSRP_ECOLI (SWALL:P32052) (159 aa) fasta scores: E(): 8.4e-27, 50.68% id in 146 aa, and to Ralstonia solanacearum SSRA-binding protein rsc1424 or rs05268 SWALL:Q8XZH1 (EMBL:AL646064) (148 aa) fasta scores: E(): 3.4e-47, 81.37% id in 145 aa SSRA-binding protein
[B] Burkholderia pseudomallei (strain 1106a)BURP002430  UniProtKB/Swiss-Prot SSRP_BURP0  SsrA-binding protein
[B] Burkholderia pseudomallei (strain 1710b)BURP102510  UniProtKB/Swiss-Prot SSRP_BURP1  SsrA-binding protein identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086
[B] Burkholderia pseudomallei (strain 668)BURP602386  UniProtKB/Swiss-Prot SSRP_BURP6  SsrA-binding protein
[B] Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301)BURTA01981  UniProtKB/Swiss-Prot SSRP_BURTA  SsrA-binding protein identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086
[B] Burkholderia xenovorans (strain LB400)BURXL02637  UniProtKB/Swiss-Prot SSRP_BURXL  SsrA-binding protein
[B] Cupriavidus taiwanensis (strain R1 / LMG 19424)CUPTR01622  UniProtKB/Swiss-Prot SSRP_CUPTR  RNA-binding protein, component of the SsrA quality-control system
[B] Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337)RALEH01979  UniProtKB/Swiss-Prot SSRP_RALEH  tmRNA-binding protein small potein B
[B] Ralstonia eutropha (strain JMP134)RALEJ01836  UniProtKB/Swiss-Prot SSRP_RALEJ  SmpB protein
[B] Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839)RALME01439  UniProtKB/Swiss-Prot SSRP_RALME  SsrA-binding protein
[B] Polynucleobacter necessarius (strain STIR1)POLNS00457  UniProtKB/TrEMBL B1XTW2  SsrA-binding protein
[B] Polynucleobacter sp. (strain QLW-P1DMWA-1)POLSQ01415  UniProtKB/Swiss-Prot SSRP_POLSQ  SsrA-binding protein
[B] Ralstonia pickettii (strain 12J)RALPJ01267  UniProtKB/Swiss-Prot SSRP_RALPJ  SsrA-binding protein
[B] Ralstonia solanacearumRALSO01420  UniProtKB/Swiss-Prot SSRP_RALSO  Product confidence : probable Gene name confidence : probable predicted by Codon_usage predicted by Homology predicted by FrameD PROBABLE SSRA-BINDING PROTEIN (SMALL PROTEIN B)
[B] Acidovorax avenae subsp. citrulli (strain AAC00-1)ACIAC03216  UniProtKB/Swiss-Prot SSRP_ACIAC  SsrA-binding protein TIGRFAM: SsrA-binding protein PFAM: SmpB protein KEGG: rfr:Rfer_2546 SsrA-binding protein
[B] Acidovorax sp. (strain JS42)ACISJ02366  UniProtKB/Swiss-Prot SSRP_ACISJ  SsrA-binding protein TIGRFAM: SsrA-binding protein PFAM: SmpB protein KEGG: rfr:Rfer_2546 SsrA-binding protein
[B] Delftia acidovorans (strain DSM 14801 / SPH-1)DELAS02937  UniProtKB/TrEMBL A9C206  SsrA-binding protein
[B] Diaphorobacter sp. (strain TPSY)DIAST01226  UniProtKB/Swiss-Prot SSRP_DIAST  SsrA-binding protein
[B] Polaromonas naphthalenivorans (strain CJ2)POLNA01951  UniProtKB/TrEMBL A1VNT6  SsrA-binding protein
[B] Polaromonas sp. (strain JS666 / ATCC BAA-500)POLSJ02381  UniProtKB/Swiss-Prot SSRP_POLSJ  SsrA-binding protein
[B] Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118)RHOFD02485  UniProtKB/Swiss-Prot SSRP_RHOFD  SsrA-binding protein
[B] Verminephrobacter eiseniae (strain EF01-2)VEREI03786  UniProtKB/Swiss-Prot SSRP_VEREI  SsrA-binding protein
[B] Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6)LEPCP02039  UniProtKB/Swiss-Prot SSRP_LEPCP  SsrA-binding protein
[B] Methylibium petroleiphilum (strain PM1)METPP01581  UniProtKB/Swiss-Prot SSRP_METPP  SsrA-binding protein
[B] Herminiimonas arsenicoxydansHERAR01282  UniProtKB/TrEMBL A4G4U1  SsrA-binding protein, trans-translation protein, binds tmRNA and tRNA
[B] Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis)JANMA02037  UniProtKB/TrEMBL A6SZN1  SsrA(TmRNA)-binding protein
[B] Thiobacillus denitrificans (strain ATCC 25259)THIDA01755  UniProtKB/Swiss-Prot SSRP_THIDA  tmRNA-binding protein SmpB
[B] Methylobacillus flagellatus (strain KT / ATTC 51484 / DSM 6875)METFK00998  UniProtKB/Swiss-Prot SSRP_METFK  SsrA-binding protein
[B] Chromobacterium violaceumCHRVO03456  UniProtKB/Swiss-Prot SSRP_CHRVO  identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0691 small protein B
[B] Laribacter hongkongensis (strain HLHK9)LARHH00753  UniProtKB/TrEMBL C1D4H7  SmpB
[B] Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)NEIG100890  UniProtKB/TrEMBL Q5F816  Best Blastp Hit: pir||A81869 small protein B homolog NMA1726 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380367|emb|CAB84954.1| (AL162756) small protein B homolog [Neisseria meningitidis] COG0691 tmRNA-binding protein SmpB putative small protein B homolog
[B] Neisseria gonorrhoeae (strain NCCP11945)NEIG200782  UniProtKB/TrEMBL B4RKZ3  SsrA-binding protein
[B] Neisseria meningitidis serogroup ANEIMA01505   CAM08855.1  Small protein B homolog
[B] Neisseria meningitidis serogroup BNEIMB01403  UniProtKB/Swiss-Prot SSRP_NEIMB  SsrA-binding protein
[B] Neisseria meningitidis serogroup C (strain 053442)NEIM001354  UniProtKB/Swiss-Prot SSRP_NEIM0  small protein B Code: O; COG: COG0691
[B] Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18)NEIMF01309   CAM10662.1  Small protein B homolog
[B] Nitrosomonas europaeaNITEU00416  UniProtKB/Swiss-Prot SSRP_NITEU  SmpB protein
[B] Nitrosomonas eutropha (strain C71)NITEC00560  UniProtKB/Swiss-Prot SSRP_NITEC  SsrA-binding protein TIGRFAM: SsrA-binding protein PFAM: SmpB protein KEGG: neu:NE0430 SmpB protein
[B] Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849)NITMU01163  UniProtKB/Swiss-Prot SSRP_NITMU  SsrA-binding protein
[B] Azoarcus sp. (strain BH72)AZOSB01572  UniProtKB/Swiss-Prot SSRP_AZOSB  probable SsrA-binding protein Probable SsrA-binding protein. Homology to smpB of E. coli of 54% (sprot|SSRP_ECOLI) Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes (By similarity). Tigrfam: smpB: SsrA-binding protein Pfam: SmpB protein no signal peptide no TMHs High confidence in function and specificity
[B] Azoarcus sp. (strain EbN1)AZOSE03692  UniProtKB/Swiss-Prot SSRP_AZOSE  tmRNA-binding protein
[B] Dechloromonas aromatica (strain RCB)DECAR02297  UniProtKB/Swiss-Prot SSRP_DECAR  SmpB protein
[B] Bdellovibrio bacteriovorusBDEBA00578  UniProtKB/Swiss-Prot SSRP_BDEBA  hypothetical protein SSRA-binding protein
[B] Desulfatibacillum alkenivorans (strain AK-01)DESAA01910  UniProtKB/TrEMBL B8FEW4  SsrA-binding protein
[B] Desulfococcus oleovorans (strain DSM 6200 / Hxd3)DESOH02680  UniProtKB/TrEMBL A8ZXC1  SsrA-binding protein
[B] Desulfotalea psychrophilaDESPS00522  UniProtKB/Swiss-Prot SSRP_DESPS  probable SsrA-binding protein
[B] Desulfovibrio desulfuricans (strain G20)DESDG01070  UniProtKB/Swiss-Prot SSRP_DESDG  SsrA-binding protein
[B] Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)DESVH00822  UniProtKB/Swiss-Prot SSRP_DESVH  identified by similarity to GP:20150724; match to protein family HMM PF01668; match to protein family HMM TIGR00086 SsrA-binding protein
[B] Desulfovibrio vulgaris subsp. vulgaris (strain DP4)DESVV02139  UniProtKB/Swiss-Prot SSRP_DESVV  SsrA-binding protein
[B] Lawsonia intracellularis (strain PHE/MN1-00)LAWIP00225  UniProtKB/Swiss-Prot SSRP_LAWIP  tmRNA-binding protein
[B] Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622)GEOBB02969  UniProtKB/TrEMBL B5E842  SsrA-binding protein
[B] Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ)GEOLS02627  UniProtKB/TrEMBL B3E6Z7  SsrA-binding protein
[B] Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)GEOMG01596   ABB31877.1  SmpB protein
[B] Geobacter sulfurreducensGEOSL01683  UniProtKB/Swiss-Prot SSRP_GEOSL  SsrA-binding protein
[B] Geobacter uraniumreducens (strain Rf4)GEOUR01995  UniProtKB/Swiss-Prot SSRP_GEOUR  SsrA-binding protein
[B] Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)PELCD01953  UniProtKB/Swiss-Prot SSRP_PELCD  SsrA-binding protein
[B] Pelobacter propionicus (strain DSM 2379)PELPD01249  UniProtKB/Swiss-Prot SSRP_PELPD  SsrA-binding protein TIGRFAM: SsrA-binding protein PFAM: SmpB protein KEGG: gme:Gmet_1646 SsrA-binding protein
[B] Anaeromyxobacter dehalogenans (strain 2CP-C)ANADE03666  UniProtKB/Swiss-Prot SSRP_ANADE  SsrA-binding protein
[B] Anaeromyxobacter sp. (strain Fw109-5)ANADF03761  UniProtKB/Swiss-Prot SSRP_ANADF  SsrA-binding protein
[B] Anaeromyxobacter sp. (strain K)ANASK03696  UniProtKB/Swiss-Prot SSRP_ANASK  SsrA-binding protein
[B] Myxococcus xanthus (strain DK 1622)MYXXD01968  UniProtKB/Swiss-Prot SSRP_MYXXD  SsrA-binding protein identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086
[B] Syntrophus aciditrophicus (strain SB)SYNAS01701  UniProtKB/Swiss-Prot SSRP_SYNAS  ssrA-binding protein
[B] Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB)SYNFM00760  UniProtKB/Swiss-Prot SSRP_SYNFM  SsrA-binding protein TIGRFAM: SsrA-binding protein PFAM: SmpB protein KEGG: gme:Gmet_1646 SsrA-binding protein
[B] Arcobacter butzleri (strain RM4018)ARCB402011  UniProtKB/Swiss-Prot SSRP_ARCB4  TmRNA-binding protein SmpB
[B] Campylobacter concisus (strain 13826)CAMC101202  UniProtKB/Swiss-Prot SSRP_CAMC1  SsrA-binding protein
[B] Campylobacter curvus (strain 525.92)CAMC501232  UniProtKB/Swiss-Prot SSRP_CAMC5  SsrA-binding protein
[B] Campylobacter fetus subsp. fetus (strain 82-40)CAMFF00674  UniProtKB/Swiss-Prot SSRP_CAMFF  SsrA-binding protein identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086
[B] Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A)CAMHC01045  UniProtKB/Swiss-Prot SSRP_CAMHC  SsrA-binding protein
[B] Campylobacter jejuniCAMJE01041  UniProtKB/Swiss-Prot SSRP_CAMJE  SsrA-binding protein
[B] Campylobacter jejuni (strain RM1221)CAMJR01205  UniProtKB/Swiss-Prot SSRP_CAMJR  identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086 SsrA-binding protein
[B] Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97)CAMJD00493  UniProtKB/Swiss-Prot SSRP_CAMJD  SsrA-binding protein
[B] Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176)CAMJJ01054  UniProtKB/Swiss-Prot SSRP_CAMJJ  SsrA-binding protein identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086
[B] Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828)CAMJ801040  UniProtKB/Swiss-Prot SSRP_CAMJ8  Small protein B-like protein
[B] Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060)CAMLR01014  UniProtKB/TrEMBL B9KCU3  SsrA-binding protein
[B] Helicobacter acinonychis (strain Sheeba)HELAH00157  UniProtKB/Swiss-Prot SSRP_HELAH  SsrA-binding protein High confidence in function and specificity
[B] Helicobacter hepaticusHELHP00121  UniProtKB/Swiss-Prot SSRP_HELHP  tmRNA-binding protein SmpB
[B] Helicobacter pyloriHELPY01417  UniProtKB/Swiss-Prot SSRP_HELPY  similar to GB:L42023 SP:P44967 PID:1006163 PID:1221094 PID:1205231 percent identity: 42.11; identified by sequence similarity; putative small protein (smpB)
[B] Helicobacter pylori (strain G27)HELPG01332  UniProtKB/Swiss-Prot SSRP_HELPG  SsrA-binding protein
[B] Helicobacter pylori (strain HPAG1)HELPH01366  UniProtKB/Swiss-Prot SSRP_HELPH  SsrA-binding protein
[B] Helicobacter pylori (strain Shi470)HELPS01397  UniProtKB/Swiss-Prot SSRP_HELPS  SsrA-binding protein
[B] Helicobacter pylori J99HELPJ01331  UniProtKB/Swiss-Prot SSRP_HELPJ  SsrA-binding protein
[B] Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251)SULDN00440  UniProtKB/Swiss-Prot SSRP_SULDN  SsrA-binding protein
[B] Wolinella succinogenesWOLSU00809  UniProtKB/Swiss-Prot SSRP_WOLSU  SMALL PROTEIN B HOMOLOG
[B] Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH)NAUPA01349  UniProtKB/Swiss-Prot SSRP_NAUPA  SsrA-binding protein
[B] Nitratiruptor sp. (strain SB155-2)NITSB01476  UniProtKB/Swiss-Prot SSRP_NITSB  SsrA RNA-binding protein
[B] Sulfurovum sp. (strain NBC37-1)SULNB00375  UniProtKB/Swiss-Prot SSRP_SULNB  SsrA RNA-binding protein
[B] Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455)ACIF200269  UniProtKB/TrEMBL B7J421  SsrA-binding protein
[B] Acidithiobacillus ferrooxidans (strain ATCC 53993)ACIF500422  UniProtKB/TrEMBL B5ELT6  SsrA-binding protein
[B] Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240)AERHH01398  UniProtKB/Swiss-Prot SSRP_AERHH  SsrA-binding protein identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086
[B] Aeromonas salmonicida (strain A449)AERS402627  UniProtKB/Swiss-Prot SSRP_AERS4  SsrA-binding protein
[B] Alteromonas macleodii (strain DSM 17117 / Deep ecotype)ALTMD01779  UniProtKB/Swiss-Prot SSRP_ALTMD  SsrA-binding protein
[B] Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8)MARAV03234  UniProtKB/Swiss-Prot SSRP_MARAV  SsrA-binding protein TIGRFAM: SsrA-binding protein PFAM: SmpB protein KEGG: hch:HCH_01215 SsrA-binding protein
[B] Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024)SACD202726   ABD82001.1  ssrA-binding protein (Small protein B)
[B] Colwellia psychrerythraea (strain 34H / ATCC BAA-681)COLP303671  UniProtKB/Swiss-Prot SSRP_COLP3  identified by similarity to SP:P32052; match to protein family HMM PF01668; match to protein family HMM TIGR00086 SsrA-binding protein
[B] Idiomarina loihiensisIDILO00888  UniProtKB/Swiss-Prot SSRP_IDILO  SmpB TmRNA-binding protein
[B] Pseudoalteromonas atlantica (strain T6c / BAA-1087)PSEA601723  UniProtKB/Swiss-Prot SSRP_PSEA6  SsrA-binding protein
[B] Pseudoalteromonas haloplanktis (strain TAC 125)PSEHT00807  UniProtKB/Swiss-Prot SSRP_PSEHT  Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 10393194; Product type f : factor SsrA-binding protein (small protein B)
[B] Psychromonas ingrahamii (strain 37)PSYIN01519  UniProtKB/Swiss-Prot SSRP_PSYIN  SsrA-binding protein TIGRFAM: SsrA-binding protein PFAM: SmpB protein KEGG: sgl:SG1804 small protein B
[B] Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)SHEAM02376  UniProtKB/Swiss-Prot SSRP_SHEAM  SsrA-binding protein KEGG: son:SO1473 SsrA-binding protein
[B] Shewanella baltica (strain OS155 / ATCC BAA-1091)SHEB501238  UniProtKB/Swiss-Prot SSRP_SHEB5  SsrA-binding protein
[B] Shewanella baltica (strain OS185)SHEB801267  UniProtKB/Swiss-Prot SSRP_SHEB8  SsrA-binding protein
[B] Shewanella baltica (strain OS195)SHEB901318  UniProtKB/Swiss-Prot SSRP_SHEB9  TIGRFAM: SsrA-binding protein PFAM: SmpB protein KEGG: shw:Sputw3181_2876 SsrA-binding protein SsrA-binding protein
[B] Shewanella baltica (strain OS223)SHEB202953  UniProtKB/Swiss-Prot SSRP_SHEB2  SsrA-binding protein
[B] Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)SHEDO01212   ABE54525.1  SsrA-binding protein
[B] Shewanella frigidimarina (strain NCIMB 400)SHEFN01071  UniProtKB/Swiss-Prot SSRP_SHEFN  SsrA-binding protein
[B] Shewanella halifaxensis (strain HAW-EB4)SHEHH01335  UniProtKB/Swiss-Prot SSRP_SHEHH  SsrA-binding protein
[B] Shewanella loihica (strain BAA-1088 / PV-4)SHELP01263  UniProtKB/Swiss-Prot SSRP_SHELP  SsrA-binding protein TIGRFAM: SsrA-binding protein PFAM: SmpB protein KEGG: shm:Shewmr7_2854 SsrA-binding protein
[B] Shewanella oneidensisSHEON01397  UniProtKB/Swiss-Prot SSRP_SHEON  SsrA-binding protein
[B] Shewanella pealeana (strain ANG-SQ1 / ATCC 700345)SHEPA01258  UniProtKB/Swiss-Prot SSRP_SHEPA  TIGRFAM: SsrA-binding protein PFAM: SmpB protein KEGG: slo:Shew_1268 SsrA-binding protein SsrA-binding protein
[B] Shewanella piezotolerans (strain WP3 / JCM 13877)SHEPW01358  UniProtKB/TrEMBL B8CKN9  SmpB protein
[B] Shewanella putrefaciens (strain CN-32 / ATCC BAA-453)SHEPC01202  UniProtKB/Swiss-Prot SSRP_SHEPC  SsrA-binding protein
[B] Shewanella sediminis (strain HAW-EB3)SHESH01403  UniProtKB/Swiss-Prot SSRP_SHESH  KEGG: slo:Shew_1268 SsrA-binding protein SsrA-binding protein
[B] Shewanella sp. (strain ANA-3)SHESA02915  UniProtKB/Swiss-Prot SSRP_SHESA  SsrA-binding protein TIGRFAM: SsrA-binding protein PFAM: SmpB protein KEGG: son:SO1473 SsrA-binding protein
[B] Shewanella sp. (strain MR-4)SHESM02759  UniProtKB/Swiss-Prot SSRP_SHESM  SsrA-binding protein
[B] Shewanella sp. (strain MR-7)SHESR02822  UniProtKB/Swiss-Prot SSRP_SHESR  SsrA-binding protein
[B] Shewanella sp. (strain W3-18-1)SHESW02807  UniProtKB/Swiss-Prot SSRP_SHESW  SsrA-binding protein TIGRFAM: SsrA-binding protein PFAM: SmpB protein KEGG: shm:Shewmr7_2854 SsrA-binding protein
[B] Shewanella woodyi (strain ATCC 51908 / MS32)SHEWM01502  UniProtKB/Swiss-Prot SSRP_SHEWM  SsrA-binding protein
[B] Baumannia cicadellinicola (subsp. Homalodisca coagulata)BAUCH00518  UniProtKB/Swiss-Prot SSRP_BAUCH  SsrA-binding protein identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086
[B] Dichelobacter nodosus (strain VCS1703A)DICNV00935  UniProtKB/Swiss-Prot SSRP_DICNV  SsrA-binding protein
[B] Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)NITOC01126  UniProtKB/Swiss-Prot SSRP_NITOC  SmpB protein
[B] Alkalilimnicola ehrlichei (strain MLHE-1)ALHEH01891  UniProtKB/Swiss-Prot SSRP_ALHEH  SsrA-binding protein
[B] Halorhodospira halophila (strain DSM 244 / SL1)HALHL01455  UniProtKB/Swiss-Prot SSRP_HALHL  SsrA-binding protein
[B] Thioalkalivibrio sp. (strain HL-EbGR7)THISH00940  UniProtKB/TrEMBL B8GNW1  SsrA-binding protein
[B] Buchnera aphidicola (subsp. Acyrthosiphon pisum)BUCAI00236  UniProtKB/Swiss-Prot SSRP_BUCAI  small protein B
[B] Buchnera aphidicola (subsp. Baizongia pistaciae)BUCBP00218  UniProtKB/Swiss-Prot SSRP_BUCBP  COG0691; small protein B SsrA-binding protein
[B] Buchnera aphidicola (subsp. Schizaphis graminum)BUCAP00233  UniProtKB/Swiss-Prot SSRP_BUCAP  small protein B
[B] Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A)BUCA500232  UniProtKB/Swiss-Prot SSRP_BUCA5  SsrA-binding protein
[B] Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7)BUCAT00232  UniProtKB/Swiss-Prot SSRP_BUCAT  SsrA-binding protein
[B] Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)CITK803822  UniProtKB/Swiss-Prot SSRP_CITK8  SsrA-binding protein
[B] Enterobacter sakazakii (strain ATCC BAA-894)ENTS800608  UniProtKB/Swiss-Prot SSRP_ENTS8  Putative uncharacterized protein
[B] Enterobacter sp. (strain 638)ENT3803072   ABP61764.1  SsrA-binding protein
[B] Erwinia tasmaniensis (strain DSM 17950 / ET1/99)ERWT900971  UniProtKB/Swiss-Prot SSRP_ERWT9  Small protein B, tmRNA-binding protein
[B] Escherichia coli (strain 55989 / EAEC)ECO5502812  UniProtKB/Swiss-Prot SSRP_ECO55  Trans-translation protein
[B] Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks)ECOLC01029  UniProtKB/Swiss-Prot SSRP_ECOLC  SsrA-binding protein
[B] Escherichia coli (strain DH10B)ECODH02467  UniProtKB/Swiss-Prot SSRP_ECODH  Trans-translation protein
[B] Escherichia coli (strain K12)ECOLI02541  UniProtKB/Swiss-Prot SSRP_ECOLI  SsrA-binding protein
[B] Escherichia coli (strain SE11)ECOSE02886  UniProtKB/Swiss-Prot SSRP_ECOSE  Small protein B
[B] Escherichia coli (strain SMS-3-5 / SECEC)ECOSM02667  UniProtKB/Swiss-Prot SSRP_ECOSM  SsrA-binding protein
[B] Escherichia coli (strain UTI89 / UPEC)ECOUT02890  UniProtKB/Swiss-Prot SSRP_ECOUT  SsrA-binding protein
[B] Escherichia coli O127:H6 (strain E2348/69 / EPEC)ECO2702860  UniProtKB/Swiss-Prot SSRP_ECO27  Trans-translation protein
[B] Escherichia coli O139:H28 (strain E24377A / ETEC)ECO2402742  UniProtKB/Swiss-Prot SSRP_ECO24  SsrA-binding protein
[B] Escherichia coli O157:H7ECO5703274   NP_289172.1  Residues 1 to 160 of 160 are 99.37 pct identical to residues 1 to 160 of 160 from Escherichia coli K-12 Strain MG1655: B2620 small protein B
[B] Escherichia coli O157:H7 (strain EC4115 / EHEC)ECO5E03283  UniProtKB/Swiss-Prot SSRP_ECO5E  SsrA-binding protein
[B] Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)ECOLU02867  UniProtKB/Swiss-Prot SSRP_ECOLU  SsrA-binding protein
[B] Escherichia coli O1:K1 / APECECOK102536  UniProtKB/Swiss-Prot SSRP_ECOK1  trans-translation protein
[B] Escherichia coli O45:K1 (strain S88 / ExPEC)ECO4502660  UniProtKB/Swiss-Prot SSRP_ECO45  SsrA-binding protein
[B] Escherichia coli O6ECOL603035  UniProtKB/Swiss-Prot SSRP_ECOL6  SsrA-binding protein
[B] Escherichia coli O6:K15:H31 (strain 536)ECOL502578  UniProtKB/Swiss-Prot SSRP_ECOL5  SsrA-binding protein
[B] Escherichia coli O7:K1 (strain IAI39 / ExPEC)ECO7I02671  UniProtKB/Swiss-Prot SSRP_ECO7I  SsrA-binding protein
[B] Escherichia coli O81 (strain ED1a)ECO8102889  UniProtKB/Swiss-Prot SSRP_ECO81  Trans-translation protein
[B] Escherichia coli O9:H4 (strain HS)ECOHS02576  UniProtKB/Swiss-Prot SSRP_ECOHS  SsrA-binding protein
[B] Klebsiella pneumoniae (strain 342)KLEP301155  UniProtKB/Swiss-Prot SSRP_KLEP3  SsrA-binding protein
[B] Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)KLEP702872  UniProtKB/Swiss-Prot SSRP_KLEP7  SsrA-binding protein
[B] Erwinia carotovora (subsp. atroseptica)ERWCT00825  UniProtKB/Swiss-Prot SSRP_ERWCT  Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri SsrA-binding protein SmpB or SmqB or b2620 or c3142 or z3913 or ecs3482 or sf2679 SWALL:SSRP_ECOLI (SWALL:P32052) (159 aa) fasta scores: E(): 3.5e-54, 83.01% id in 159 aa SsrA-binding protein
[B] Photorhabdus luminescens (subsp. laumondii)PHOLL03287  UniProtKB/Swiss-Prot SSRP_PHOLL  SsrA-binding protein (small protein B)
[B] Proteus mirabilis (strain HI4320)PROMH01885  UniProtKB/Swiss-Prot SSRP_PROMH  SsrA-binding protein
[B] Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)SALAR00230   ABX20186.1  Putative uncharacterized protein
[B] Salmonella agona (strain SL483)SALA402631  UniProtKB/Swiss-Prot SSRP_SALA4  SsrA-binding protein
[B] Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67SALCH02650  UniProtKB/TrEMBL Q57L18  IPR000037: SmpB protein small protein B; putative tmRNA-binding protein
[B] Salmonella dublin (strain CT_02021853)SALDC02733  UniProtKB/TrEMBL B5FS19  SsrA-binding protein
[B] Salmonella enteritidis PT4 (strain P125109)SALEP02588  UniProtKB/Swiss-Prot SSRP_SALEP  SsrA (TmRNA)-binding protein
[B] Salmonella gallinarum (strain 287/91 / NCTC 13346)SALG202558  UniProtKB/Swiss-Prot SSRP_SALG2  SsrA (TmRNA)-binding protein
[B] Salmonella heidelberg (strain SL476)SALHS02704  UniProtKB/Swiss-Prot SSRP_SALHS  SsrA-binding protein
[B] Salmonella newport (strain SL254)SALNS02711  UniProtKB/Swiss-Prot SSRP_SALNS  SsrA-binding protein
[B] Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)SALPB03275   ABX68752.1  Putative uncharacterized protein
[B] Salmonella paratyphi A (strain AKU_12601)SALPK02480  UniProtKB/Swiss-Prot SSRP_SALPK  SsrA (TmRNA)-binding protein
[B] Salmonella paratyphi-aSALPA02368  UniProtKB/Swiss-Prot SSRP_SALPA  similar to Salmonella typhi CT18 SsrA (tmRNA)-binding protein SsrA (tmRNA)-binding protein
[B] Salmonella schwarzengrund (strain CVM19633)SALSV02674  UniProtKB/Swiss-Prot SSRP_SALSV  SsrA-binding protein
[B] Salmonella typhiSALTI02630  UniProtKB/Swiss-Prot SSRP_SALTI  SsrA-binding protein
[B] Salmonella typhimuriumSALTY02574  UniProtKB/Swiss-Prot SSRP_SALTY  ssRNA-binding protein (SW:SSRP_SALTY); putative tmRNA-binding protein; aids stalled ribosomes in releasing damaged mRNA and degrading small incompletely synthesized proteins small protein B
[B] Serratia proteamaculans (strain 568)SERP503664  UniProtKB/Swiss-Prot SSRP_SERP5  SsrA-binding protein
[B] Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)SHIB302306  UniProtKB/Swiss-Prot SSRP_SHIB3  SsrA-binding protein
[B] Shigella boydii serotype 4 (strain Sb227)SHIBS02235  UniProtKB/Swiss-Prot SSRP_SHIBS  Code: O; COG: COG0691 small protein B
[B] Shigella dysenteriae serotype 1 (strain Sd197)SHIDS02161  UniProtKB/Swiss-Prot SSRP_SHIDS  Code: O; COG: COG0691 small protein B
[B] Shigella flexneriSHIFL02404  UniProtKB/Swiss-Prot SSRP_SHIFL  Residues 1 to 160 of 160 are 100 pct identical to residues 1 to 160 of a 160 aa protein from Escherichia coli O157:H7 ref: NP_311509.1 small protein B
[B] Shigella flexneri serotype 5b (strain 8401)SHIF802427  UniProtKB/Swiss-Prot SSRP_SHIF8  small protein B Code: O; COG: COG0691
[B] Shigella sonnei (strain Ss046)SHISS02268  UniProtKB/Swiss-Prot SSRP_SHISS  Code: O; COG: COG0691 small protein B
[B] Sodalis glossinidius (strain morsitans)SODGM01771  UniProtKB/Swiss-Prot SSRP_SODGM  small protein B
[B] Wigglesworthia glossinidia brevipalpisWIGBR00112  UniProtKB/TrEMBL Q8D389  Protein synthesis
[B] Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081)YERE800938  UniProtKB/Swiss-Prot SSRP_YERE8  SsrA-binding protein
[B] Yersinia pestisYERPE01023  UniProtKB/Swiss-Prot SSRP_YERPE  SsrA-binding protein
[B] Yersinia pestis (biovar Antiqua strain Antiqua)YERPA00545   ABG12547.1  SsrA-binding protein
[B] Yersinia pestis (biovar Antiqua strain Nepal516)YERPN02773   ABG19224.1  SsrA-binding protein
[B] Yersinia pestis (strain Pestoides F)YERPP02452   ABP40964.1  SsrA-binding protein
[B] Yersinia pestis bv. Antiqua (strain Angola)YERPG01182  UniProtKB/TrEMBL A9R2D8  SsrA-binding protein
[B] Yersinia pseudotuberculosisYERPS01126  UniProtKB/Swiss-Prot SSRP_YERPS  SsrA-binding protein
[B] Yersinia pseudotuberculosis (serotype O:1b / strain IP 31758)YERP302836  UniProtKB/Swiss-Prot SSRP_YERP3  SsrA-binding protein
[B] Yersinia pseudotuberculosis serotype IB (strain PB1/+)YERPB01176  UniProtKB/TrEMBL B2K8D7  SsrA-binding protein
[B] Yersinia pseudotuberculosis serotype O:3 (strain YPIII)YERPY02922  UniProtKB/TrEMBL B1JG71  SsrA-binding protein
[B] Candidatus Blochmannia floridanusBLOFL00518  UniProtKB/TrEMBL Q7VRQ2  COG caterory=O small protein B; putative tmRNA-binding protein
[B] Coxiella burnetiiCOXBU01229  UniProtKB/Swiss-Prot SSRP_COXBU  similar to SP:P32052; identified by sequence similarity; putative SsrA-binding protein
[B] Coxiella burnetii (strain CbuG_Q212)COXB200616  UniProtKB/Swiss-Prot SSRP_COXB2  SsrA-binding protein
[B] Coxiella burnetii (strain Dugway 5J108-111)COXBN01295  UniProtKB/Swiss-Prot SSRP_COXBN  SsrA-binding protein
[B] Coxiella burnetii (strain RSA 331 / Henzerling II)COXBR01209  UniProtKB/Swiss-Prot SSRP_COXBR  SsrA-binding protein
[B] Legionella pneumophila (strain Corby)LEGPC03008  UniProtKB/Swiss-Prot SSRP_LEGPC  SsrA (TmRNA) binding protein
[B] Legionella pneumophila (strain Lens)LEGPL02747  UniProtKB/Swiss-Prot SSRP_LEGPL  similar to SsrA-binding protein hypothetical protein
[B] Legionella pneumophila (strain Paris)LEGPA02880  UniProtKB/Swiss-Prot SSRP_LEGPA  similar to SsrA-binding protein hypothetical protein
[B] Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152)LEGPH02752  UniProtKB/Swiss-Prot SSRP_LEGPH  conserved gene SsrA (tmRNA) binding protein
[B] Methylococcus capsulatusMETCA02458  UniProtKB/Swiss-Prot SSRP_METCA  identified by similarity to SP:P32052; match to protein family HMM PF01668; match to protein family HMM TIGR00086 SsrA-binding protein
[B] Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573)ALCBS00304   CAL15753.1  SsrA-binding protein
[B] Hahella chejuensis (strain KCTC 2396)HAHCH01150  UniProtKB/Swiss-Prot SSRP_HAHCH  SsrA-binding protein TIGRFAMsMatches:TIGR00086
[B] Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768)CHRSD03080  UniProtKB/Swiss-Prot SSRP_CHRSD  SsrA-binding protein
[B] Marinomonas sp. (strain MWYL1)MARMS03902  UniProtKB/Swiss-Prot SSRP_MARMS  SsrA-binding protein
[B] Actinobacillus pleuropneumoniae serotype 3 (strain JL03)ACTPJ00828  UniProtKB/TrEMBL B0BPF2  SsrA-binding protein, small major protein B
[B] Actinobacillus pleuropneumoniae serotype 5b (strain L20)ACTP200852  UniProtKB/Swiss-Prot SSRP_ACTP2  SsrA-binding protein
[B] Actinobacillus pleuropneumoniae serotype 7 (strain AP76)ACTP700908  UniProtKB/Swiss-Prot SSRP_ACTP7  SsrA-binding protein
[B] Actinobacillus succinogenes (strain ATCC 55618 / 130Z)ACTSZ00864  UniProtKB/Swiss-Prot SSRP_ACTSZ  SsrA-binding protein
[B] Haemophilus ducreyiHAEDU00971  UniProtKB/Swiss-Prot SSRP_HAEDU  SsrA-binding protein, small major protein B
[B] Haemophilus influenzaeHAEIN00968  UniProtKB/Swiss-Prot SSRP_HAEIN  SsrA-binding protein
[B] Haemophilus influenzae (strain 86-028NP)HAEI801013  UniProtKB/Swiss-Prot SSRP_HAEI8  Similar to: HI0981, SSRP_HAEIN SsrA-binding protein
[B] Haemophilus influenzae (strain PittEE)HAEIE01233  UniProtKB/Swiss-Prot SSRP_HAEIE  SsrA-binding protein
[B] Haemophilus influenzae (strain PittGG)HAEIG01395  UniProtKB/Swiss-Prot SSRP_HAEIG  SsrA-binding protein
[B] Haemophilus parasuis serovar 5 (strain SH0165)HAEPS00592  UniProtKB/Swiss-Prot SSRP_HAEPS  SsrA-binding protein
[B] Haemophilus somnus (strain 129PT)HAES100478  UniProtKB/Swiss-Prot SSRP_HAES1  SsrA-binding protein
[B] Haemophilus somnus (strain 2336)HAES200754  UniProtKB/Swiss-Prot SSRP_HAES2  SsrA-binding protein
[B] Mannheimia succiniciproducens (strain MBEL55E)MANSM01502   YP_088697.1  tmRNA-binding protein SmpB protein
[B] Pasteurella multocidaPASMU00217  UniProtKB/Swiss-Prot SSRP_PASMU  SsrA-binding protein
[B] Acinetobacter baumannii (strain AB0057)ACIB500856  UniProtKB/Swiss-Prot SSRP_ACIB5  SsrA-binding protein
[B] Acinetobacter baumannii (strain AB307-0294)ACIB302718  UniProtKB/Swiss-Prot SSRP_ACIB3  SsrA-binding protein
[B] Acinetobacter baumannii (strain ACICU)ACIBC00794  UniProtKB/Swiss-Prot SSRP_ACIBC  TmRNA-binding protein
[B] Acinetobacter baumannii (strain AYE)ACIBY02751  UniProtKB/Swiss-Prot SSRP_ACIBY  SsrA-binding protein
[B] Acinetobacter baumannii (strain SDF)ACIBS02274  UniProtKB/TrEMBL B0VTW1  SsrA-binding protein
[B] Acinetobacter sp. (strain ADP1)ACIAD02613  UniProtKB/Swiss-Prot SSRP_ACIAD  Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type f : factor ssrA-binding protein (Small protein B)
[B] Psychrobacter arcticus (strain DSM 17307 / 273-4)PSYA200322  UniProtKB/Swiss-Prot SSRP_PSYA2  SsrA-binding protein
[B] Psychrobacter cryohalolentis (strain K5)PSYCK00358  UniProtKB/Swiss-Prot SSRP_PSYCK  SsrA-binding protein
[B] Psychrobacter sp. (strain PRwf-1)PSYWF01938  UniProtKB/Swiss-Prot SSRP_PSYWF  SsrA-binding protein
[B] Cellvibrio japonicus (strain Ueda107)CELJU03255  UniProtKB/Swiss-Prot SSRP_CELJU  SsrA-binding protein
[B] Pseudomonas aeruginosaPSEAE04755  UniProtKB/Swiss-Prot SSRP_PSEAE  SsrA-binding protein
[B] Pseudomonas aeruginosa (strain LESB58)PSEA805125  UniProtKB/Swiss-Prot SSRP_PSEA8  SsrA-binding protein
[B] Pseudomonas aeruginosa (strain PA7)PSEA705374  UniProtKB/Swiss-Prot SSRP_PSEA7  SsrA-binding protein
[B] Pseudomonas aeruginosa (strain UCBPP-PA14)PSEAB05071  UniProtKB/Swiss-Prot SSRP_PSEAB  ssrA(tmRNA)-binding protein (small protein B)
[B] Pseudomonas entomophila (strain L48)PSEE400688  UniProtKB/Swiss-Prot SSRP_PSEE4  ssrA-binding protein Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type f : factor
[B] Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)PSEF500802  UniProtKB/Swiss-Prot SSRP_PSEF5  identified by similarity to SP:P32052; match to protein family HMM PF01668; match to protein family HMM TIGR00086 SsrA-binding protein
[B] Pseudomonas fluorescens (strain PfO-1)PSEPF00750  UniProtKB/Swiss-Prot SSRP_PSEPF  SmpB protein
[B] Pseudomonas mendocina (strain ymp)PSEMY03577   ABP86380.1  SsrA-binding protein
[B] Pseudomonas putida (strain F1 / ATCC 700007)PSEP104535  UniProtKB/Swiss-Prot SSRP_PSEP1  SsrA-binding protein
[B] Pseudomonas putida (strain GB-1)PSEPG04693  UniProtKB/Swiss-Prot SSRP_PSEPG  SsrA-binding protein TIGRFAM: SsrA-binding protein PFAM: SmpB protein KEGG: pen:PSEEN0770 SsrA-binding protein
[B] Pseudomonas putida (strain KT2440)PSEPK04634  UniProtKB/Swiss-Prot SSRP_PSEPK  similar to SP:P32052; identified by sequence similarity; putative SsrA-binding protein
[B] Pseudomonas putida (strain W619)PSEPW00696  UniProtKB/Swiss-Prot SSRP_PSEPW  SsrA-binding protein
[B] Pseudomonas stutzeri (strain A1501)PSEU503224  UniProtKB/Swiss-Prot SSRP_PSEU5  SmpB protein
[B] Pseudomonas syringae (pv. tomato)PSESM04272  UniProtKB/Swiss-Prot SSRP_PSESM  identified by match to PFAM protein family HMM PF01668 SsrA-binding protein
[B] Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6)PSE1403935  UniProtKB/Swiss-Prot SSRP_PSE14  identified by similarity to SP:P32052; match to protein family HMM PF01668; match to protein family HMM TIGR00086 SsrA-binding protein
[B] Pseudomonas syringae pv. syringae (strain B728a)PSEU204184  UniProtKB/Swiss-Prot SSRP_PSEU2  SmpB protein
[B] Francisella philomiragia subsp. philomiragia (strain ATCC 25017)FRAP200052  UniProtKB/Swiss-Prot SSRP_FRAP2  SsrA (TmRNA)-binding protein
[B] Francisella tularensis (subsp. tularensis)FRATT01148  UniProtKB/Swiss-Prot SSRP_FRATT  Similar to SSRP_PSEAE (Q9HV40) SsrA-binding protein from Pseudomonas aeruginosa (159 aa). FASTA: opt: 606 Z-score: 817.5 E(): 1.2e-37 Smith-Waterman score: 606; 59.091 identity in 154 aa overlap. SsrA (tmRNA)-binding protein
[B] Francisella tularensis subsp. holarctica (strain FTA)FRATF00614  UniProtKB/Swiss-Prot SSRP_FRATF  SsrA-binding protein
[B] Francisella tularensis subsp. holarctica (strain LVS)FRATH00709  UniProtKB/Swiss-Prot SSRP_FRATH  SsrA (tmRNA)-binding protein
[B] Francisella tularensis subsp. holarctica (strain OSU18)FRATO00608  UniProtKB/Swiss-Prot SSRP_FRATO  TmRNA-binding protein
[B] Francisella tularensis subsp. mediasiatica (strain FSC147)FRATM00642  UniProtKB/Swiss-Prot SSRP_FRATM  SsrA (TmRNA)-binding protein
[B] Francisella tularensis subsp. novicida (strain U112)FRATN01139  UniProtKB/Swiss-Prot SSRP_FRATN  SsrA (tmRNA)-binding protein
[B] Francisella tularensis subsp. tularensis (strain WY96-3418)FRATW00956  UniProtKB/Swiss-Prot SSRP_FRATW  SsrA-binding protein
[B] Mycobacteriophage FRAT1FRAT101146  UniProtKB/Swiss-Prot SSRP_FRAT1  SsrA (tmRNA)-binding protein Similar to SSRP_PSEAE (Q9HV40) SsrA-binding protein from Pseudomonas aeruginosa (159 aa). FASTA: opt: 606 Z-score: 817.5 E(): 1.2e-37 Smith-Waterman score: 606; 59.091 identity in 154 aa overlap.
[B] Thiomicrospira crunogena (strain XCL-2)THICR01406  UniProtKB/Swiss-Prot SSRP_THICR  SsrA-binding protein
[B] Aliivibrio salmonicida (strain LFI1238)ALISL02196  UniProtKB/Swiss-Prot SSRP_ALISL  SsrA (TmRNA)-binding protein
[B] Vibrio fischeri (strain MJ11)VIBFM02060  UniProtKB/Swiss-Prot SSRP_VIBFM  SsrA-binding protein
[B] Photobacterium profundumPHOPR00639  UniProtKB/Swiss-Prot SSRP_PHOPR  putative small protein B,tmRNA-binding protein
[B] Vibrio choleraeVIBCH00834  UniProtKB/Swiss-Prot SSRP_VIBCH  similar to GB:D12501 SP:P32052 PID:216668 PID:1033116 GB:U00096; identified by sequence similarity; putative small protein B
[B] Vibrio cholerae (strain ATCC 39541 / O395)VIBC300354  UniProtKB/Swiss-Prot SSRP_VIBC3  SsrA-binding protein
[B] Vibrio cholerae serotype O1 (strain M66-2)VIBCM00785  UniProtKB/Swiss-Prot SSRP_VIBCM  
[B] Vibrio fischeri (strain ATCC 700601 / ES114)VIBF101998  UniProtKB/Swiss-Prot SSRP_VIBF1  SsrA-binding protein
[B] Vibrio harveyi (strain ATCC BAA-1116 / BB120)VIBHB00969  UniProtKB/Swiss-Prot SSRP_VIBHB  Putative uncharacterized protein
[B] Vibrio parahaemolyticusVIBPA00643  UniProtKB/Swiss-Prot SSRP_VIBPA  similar to GB:AAF94010.1 (AE004170) percent identity 86 in 161 aa small protein B
[B] Vibrio splendidus (strain LGP32)VIBSL00573  UniProtKB/TrEMBL B7VJW0  SsrA-binding protein
[B] Vibrio vulnificusVIBVU00346  UniProtKB/Swiss-Prot SSRP_VIBVU  tmRNA-binding protein; COG0691 Small protein B
[B] Vibrio vulnificus (strain YJ016)VIBVY00814  UniProtKB/Swiss-Prot SSRP_VIBVY  SsrA-binding protein
[B] Stenotrophomonas maltophilia (strain K279a)STRMK01857  UniProtKB/Swiss-Prot SSRP_STRMK  Putative SsrA-binding protein
[B] Stenotrophomonas maltophilia (strain R551-3)STRM501585  UniProtKB/Swiss-Prot SSRP_STRM5  SsrA-binding protein
[B] Xanthomonas axonopodis (pv. citri)XANAC01474  UniProtKB/Swiss-Prot SSRP_XANAC  identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark small protein B
[B] Xanthomonas campestris pv. campestrisXANCP01428  UniProtKB/Swiss-Prot SSRP_XANCP  SsrA-binding protein
[B] Xanthomonas campestris pv. campestris (strain 8004)XANC802682  UniProtKB/Swiss-Prot SSRP_XANC8  small protein B
[B] Xanthomonas campestris pv. campestris (strain B100)XANCB02792  UniProtKB/Swiss-Prot SSRP_XANCB  SsrA-binding protein SmpB
[B] Xanthomonas campestris pv. vesicatoria (strain 85-10)XANC501521  UniProtKB/Swiss-Prot SSRP_XANC5  SsrA-binding protein SmpB
[B] Xanthomonas oryzae (pv. oryzae)XANOR01818  UniProtKB/Swiss-Prot SSRP_XANOR  identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark small protein B
[B] Xanthomonas oryzae pv. oryzae (strain MAFF 311018)XANOM01759  UniProtKB/Swiss-Prot SSRP_XANOM  small protein B identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker
[B] Xanthomonas oryzae pv. oryzae (strain PXO99A)XANOP02499  UniProtKB/Swiss-Prot SSRP_XANOP  SsrA-binding protein
[B] Xylella fastidiosaXYLFA02300  UniProtKB/Swiss-Prot SSRP_XYLFA  similar to SP|P32052 (percent identity: 60 %/query alignment coverage: 88.6 %/subject alignment coverage: 92.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 99 conserved hypothetical protein
[B] Xylella fastidiosa (strain M12)XYLFM01332  UniProtKB/Swiss-Prot SSRP_XYLFM  Small protein B
[B] Xylella fastidiosa (strain M23)XYLF201374  UniProtKB/Swiss-Prot SSRP_XYLF2  SsrA-binding protein
[B] Xylella fastidiosa (strain Temecula1 / ATCC 700964)XYLFT01286  UniProtKB/Swiss-Prot SSRP_XYLFT  SsrA-binding protein
[B] Ruthia magnifica subsp. Calyptogena magnificaRUTMC00344  UniProtKB/Swiss-Prot SSRP_RUTMC  SsrA-binding protein
[B] Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA)VESOH00340  UniProtKB/Swiss-Prot SSRP_VESOH  SsrA-binding protein
[B] Magnetococcus sp. (strain MC-1)MAGSM03306  UniProtKB/Swiss-Prot SSRP_MAGSM  SsrA-binding protein TIGRFAM: SsrA-binding protein PFAM: SmpB protein KEGG: atc:AGR_C_1885 SsrA-binding protein
[B] Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris)LEPBP01373  UniProtKB/TrEMBL B0SPV4  SsrA-binding protein
[B] Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames)LEPBA01329  UniProtKB/TrEMBL B0SGF3  SsrA/tmRNA-binding protein
[B] Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197)LEPBJ00883  UniProtKB/Swiss-Prot SSRP_LEPBJ  ssrA/tmRNA-binding protein cytoplasmic protein
[B] Leptospira borgpetersenii serovar Hardjo-bovis (strain L550)LEPBL01720  UniProtKB/Swiss-Prot SSRP_LEPBL  ssrA/tmRNA-binding protein cytoplasmic protein
[B] Leptospira interrogansLEPIN01292  UniProtKB/Swiss-Prot SSRP_LEPIN  SsrA-binding protein
[B] Leptospira interrogans (serogroup Icterohaemorrhagiae / serovar Copenhageni)LEPIC02338  UniProtKB/Swiss-Prot SSRP_LEPIC  identified by sequence similarity; putative; ORF located using Blastx/Glimmer SsrA-binding protein
[B] Borrelia afzelii (strain PKo)BORAP00032  UniProtKB/Swiss-Prot SSRP_BORAP  Small protein
[B] Borrelia burgdorferiBORBU00033  UniProtKB/Swiss-Prot SSRP_BORBU  similar to GP:2073503 percent identity: 47.68; identified by sequence similarity; putative small protein (smpB)
[B] Borrelia burgdorferi (strain ZS7)BORBZ00033  UniProtKB/TrEMBL B7J0X2  SsrA-binding protein
[B] Borrelia duttonii (strain Ly)BORDL00036  UniProtKB/TrEMBL B5RLP0  SsrA-binding protein
[B] Borrelia gariniiBORGA00033  UniProtKB/Swiss-Prot SSRP_BORGA  SsrA-binding protein
[B] Borrelia hermsii (strain DAH)BORHD00032  UniProtKB/TrEMBL B2S1M1  SsrA-binding protein
[B] Borrelia recurrentis (strain A1)BORRA00034  UniProtKB/TrEMBL B5RQL5  SsrA-binding protein
[B] Borrelia turicatae (strain 91E135)BORT900033  UniProtKB/TrEMBL A1QYI6  SsrA-binding protein
[B] Treponema denticolaTREDE01451  UniProtKB/Swiss-Prot SSRP_TREDE  identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086 SsrA-binding protein
[B] Treponema pallidum subsp. pallidum (strain SS14)TREPS00181  UniProtKB/Swiss-Prot SSRP_TREPS  Small protein B
[B] Acholeplasma laidlawii (strain PG-8A)ACHLI00383  UniProtKB/Swiss-Prot SSRP_ACHLI  SsrA-binding protein
[B] Phytoplasma mali (strain AT)PHYMT00294  UniProtKB/TrEMBL B3QZX8  SsrA-binding protein
[B] Aster yellows witches'-broom phytoplasma (strain AYWB)AYWBP00565  UniProtKB/TrEMBL Q2NIQ2  tmRNA-binding protein
[B] Onion yellows phytoplasmaONYPE00144  UniProtKB/Swiss-Prot SSRP_ONYPE  PAM146 identified by sequence similarity; putative tmRNA-binding protein
[B] Mesoplasma florumMESFL00211  UniProtKB/Swiss-Prot SSRP_MESFL  tmRNA/ssrA-binding protein
[B] Mycoplasma agalactiae (strain PG2)MYCAP00739  UniProtKB/Swiss-Prot SSRP_MYCAP  SsrA-binding protein
[B] Mycoplasma arthritidis (strain 158L3-1)MYCA500114  UniProtKB/TrEMBL B3PM30  SsrA-binding protein
[B] Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154)MYCCT00090  UniProtKB/Swiss-Prot SSRP_MYCCT  SsrA-binding protein This proteins is 36% identical to the characterized E. coli SsrA-binding protein SmpB; identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086
[B] Mycoplasma gallisepticumMYCGA00442  UniProtKB/Swiss-Prot SSRP_MYCGA  SsrA-binding protein
[B] Mycoplasma genitaliumMYCGE00059  UniProtKB/Swiss-Prot SSRP_MYCGE  SsrA-binding protein
[B] Mycoplasma hyopneumoniae (strain 232)MYCH200108  UniProtKB/Swiss-Prot SSRP_MYCH2  SsrA-binding protein
[B] Mycoplasma hyopneumoniae (strain 7448)MYCH700263  UniProtKB/TrEMBL Q4A896  identified by sequence similarity; putative; ORF located using Blastx; COG0691 SsrA-binding protein
[B] Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110)MYCHJ00258  UniProtKB/TrEMBL Q4AA69  identified by sequence similarity; putative; ORF located using Blastx; COG0691 SsrA-binding protein
[B] Mycoplasma mobileMYCMO00264  UniProtKB/Swiss-Prot SSRP_MYCMO  COG0691; expression validated by proteogenomic mapping: 1 unique peptides covering 9.2% of sequence ssra-binding protein
[B] Mycoplasma mycoides subsp. mycoides SCMYCMS00800  UniProtKB/Swiss-Prot SSRP_MYCMS  SsrA-binding protein
[B] Mycoplasma penetransMYCPE00349  UniProtKB/Swiss-Prot SSRP_MYCPE  tmRNA-binding small protein B
[B] Mycoplasma pulmonisMYCPU00351  UniProtKB/Swiss-Prot SSRP_MYCPU  identified by sequence similarity; possible; similar to SWISS-PROT:Q9X498 (SMPB_MYCFE) Blastp2 P=2e-27 C=57% SMALL PROTEIN B
[B] Mycoplasma synoviae (strain 53)MYCS500464  UniProtKB/Swiss-Prot SSRP_MYCS5  identified by sequence similarity; putative; ORF located using Blastx; COG0691 SsrA-binding protein
[B] Ureaplasma parvumUREPA00058  UniProtKB/Swiss-Prot SSRP_UREPA  small protein B
[B] Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736)UREP200057  UniProtKB/Swiss-Prot SSRP_UREP2  SsrA-binding protein
[B] Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western)UREU100065  UniProtKB/TrEMBL B5ZAN8  SsrA-binding protein
[B] Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1)FERNB01454  UniProtKB/Swiss-Prot SSRP_FERNB  SsrA-binding protein
[B] Petrotoga mobilis (strain DSM 10674 / SJ95)PETMO00359  UniProtKB/Swiss-Prot SSRP_PETMO  SsrA-binding protein
[B] Thermosipho africanus (strain TCF52B)THEAB00463  UniProtKB/Swiss-Prot SSRP_THEAB  SsrA-binding protein
[B] Thermosipho melanesiensis (strain BI429 / DSM 12029)THEM400236  UniProtKB/Swiss-Prot SSRP_THEM4  SsrA-binding protein
[B] Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO)THELT00659  UniProtKB/Swiss-Prot SSRP_THELT  SsrA-binding protein
[B] Thermotoga maritimaTHEMA00251  UniProtKB/Swiss-Prot SSRP_THEMA  SsrA-binding protein
[B] Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995)THEP100660  UniProtKB/Swiss-Prot SSRP_THEP1  SsrA-binding protein
[B] Thermotoga sp. (strain RQ2)THESQ00685  UniProtKB/Swiss-Prot SSRP_THESQ  SsrA-binding protein
[B] Opitutus terrae (strain DSM 11246 / PB90-1)OPITP02698  UniProtKB/TrEMBL B1ZVY4  SsrA-binding protein
[B] Akkermansia muciniphila (strain ATCC BAA-835)AKKM801548  UniProtKB/TrEMBL B2ULK9  SsrA-binding protein
[B] Methylokorus infernorum (strain V4)METI401117  UniProtKB/TrEMBL B3DV24  TmRNA-binding protein
[B] Elusimicrobium minutum (strain Pei191)ELUMP00511  UniProtKB/Swiss-Prot SSRP_ELUMP  SsrA-binding protein
[B] Uncultured termite group 1 bacterium phylotype Rs-D17UNCTG00136  UniProtKB/TrEMBL B1GZD8  SsrA-binding protein SmpB