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OMA

Keyword Protein Sequence Group Entry

OMA Group 233993

DNA-directed RNA polymerase
This group has 45 members: 45 [B]acteria
Fingerprint: KVDNRFE

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Bartonella bacilliformis (strain ATCC 35685 / KC583)BARBK00442  UniProtKB/Swiss-Prot RPOZ_BARBK  DNA-directed RNA polymerase, omega subunit
[B] Bartonella henselaeBARHE00489  UniProtKB/Swiss-Prot RPOZ_BARHE  DNA-directed RNA polymerase omega subunit
[B] Bartonella quintanaBARQU00413  UniProtKB/Swiss-Prot RPOZ_BARQU  DNA-directed RNA polymerase omega subunit
[B] Bartonella tribocorum (strain CIP 105476 / IBS 506)BART100645  UniProtKB/Swiss-Prot RPOZ_BART1  RNA polymerase omega subunit hypothetical protein
[B] Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712)BEII902389  UniProtKB/Swiss-Prot RPOZ_BEII9  DNA-directed RNA polymerase, omega subunit
[B] Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906)METSB00982  UniProtKB/Swiss-Prot RPOZ_METSB  DNA-directed RNA polymerase, omega subunit
[B] Bradyrhizobium japonicumBRAJA05010  UniProtKB/Swiss-Prot RPOZ_BRAJA  DNA-directed RNA polymerase subunit omega
[B] Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)BRASB04378  UniProtKB/Swiss-Prot RPOZ_BRASB  DNA-directed RNA polymerase omega chain
[B] Bradyrhizobium sp. (strain ORS278)BRASO04223  UniProtKB/Swiss-Prot RPOZ_BRASO  RNA polymerase omega subunit
[B] Nitrobacter hamburgensis (strain X14 / DSM 10229)NITHX02119  UniProtKB/Swiss-Prot RPOZ_NITHX  DNA-directed RNA polymerase, omega subunit
[B] Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391)NITWN01826  UniProtKB/Swiss-Prot RPOZ_NITWN  RNA polymerase, omega subunit
[B] Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5)OLICO01809  UniProtKB/Swiss-Prot RPOZ_OLICO  DNA-directed RNA polymerase subunit omega
[B] Rhodopseudomonas palustrisRHOPA02684  UniProtKB/Swiss-Prot RPOZ_RHOPA  observed by proteomics Citation: Proteomics from VerBerkmoes et al. (2003) unpublished RNA polymerase omega subunit
[B] Rhodopseudomonas palustris (strain BisA53)RHOP502983  UniProtKB/Swiss-Prot RPOZ_RHOP5  DNA-directed RNA polymerase, omega subunit TIGRFAM: DNA-directed RNA polymerase, omega subunit PFAM: RNA polymerase Rpb6 KEGG: bja:bll5066 RNA polymerase omega subunit
[B] Rhodopseudomonas palustris (strain BisB18)RHOPB02592  UniProtKB/Swiss-Prot RPOZ_RHOPB  DNA-directed RNA polymerase, omega subunit
[B] Rhodopseudomonas palustris (strain BisB5)RHOPS02629  UniProtKB/Swiss-Prot RPOZ_RHOPS  DNA-directed RNA polymerase, omega subunit
[B] Rhodopseudomonas palustris (strain HaA2)RHOP202596  UniProtKB/Swiss-Prot RPOZ_RHOP2  DNA-directed RNA polymerase, omega subunit
[B] Rhodopseudomonas palustris (strain TIE-1)RHOPT02910  UniProtKB/Swiss-Prot RPOZ_RHOPT  DNA-directed RNA polymerase, omega subunit
[B] Brucella abortusBRUAB00619  UniProtKB/Swiss-Prot RPOZ_BRUAB  similar to BR0651, DNA-directed RNA polymerase, omega subunit RpoZ, DNA-directed RNA polymerase, omega subunit
[B] Brucella abortus (strain 2308)BRUA200665  UniProtKB/Swiss-Prot RPOZ_BRUA2  RNA polymerase, omega subunit:RNA polymerase Rpb6
[B] Brucella abortus (strain S19)BRUA100593  UniProtKB/Swiss-Prot RPOZ_BRUA1  RNA polymerase, omega subunit
[B] Brucella canis (strain ATCC 23365 / NCTC 10854)BRUC200625  UniProtKB/Swiss-Prot RPOZ_BRUC2  DNA-directed RNA polymerase, omega subunit
[B] Brucella melitensisBRUME01287  UniProtKB/Swiss-Prot RPOZ_BRUME  DNA-directed RNA polymerase subunit omega
[B] Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512)BRUO200573  UniProtKB/Swiss-Prot RPOZ_BRUO2  Dna-directed rna polymerase omega chain
[B] Brucella suisBRUSU00620  UniProtKB/Swiss-Prot RPOZ_BRUSU  similar to GP:15073996; identified by sequence similarity; putative DNA-directed RNA polymerase, omega subunit
[B] Brucella suis (strain ATCC 23445 / NCTC 10510)BRUSI00638  UniProtKB/Swiss-Prot RPOZ_BRUSI  DNA-directed RNA polymerase, omega subunit GO_function: DNA-directed RNA polymerase activity [GO ID 0003899]; GO_process: transcription [GO ID 0006350]
[B] Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168)OCHA402605  UniProtKB/Swiss-Prot RPOZ_OCHA4  DNA-directed RNA polymerase, omega subunit
[B] Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688)METC403354  UniProtKB/Swiss-Prot RPOZ_METC4  DNA-directed RNA polymerase, omega subunit TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: mex:Mext_3197 DNA-directed RNA polymerase subunit omega
[B] Methylobacterium extorquens (strain PA1)METEP03148  UniProtKB/Swiss-Prot RPOZ_METEP  DNA-directed RNA polymerase, omega subunit
[B] Methylobacterium nodulans (strain ORS2060 / LMG 21967)METNO00031  UniProtKB/Swiss-Prot RPOZ_METNO  DNA-directed RNA polymerase, omega subunit
[B] Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001)METPB03334  UniProtKB/Swiss-Prot RPOZ_METPB  DNA-directed RNA polymerase, omega subunit
[B] Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831)METRJ01857  UniProtKB/Swiss-Prot RPOZ_METRJ  DNA-directed RNA polymerase, omega subunit
[B] Methylobacterium sp. (strain 4-46)METS400030  UniProtKB/Swiss-Prot RPOZ_METS4  DNA-directed RNA polymerase, omega subunit
[B] Mesorhizobium sp. (strain BNC1)MESSB00937  UniProtKB/Swiss-Prot RPOZ_MESSB  DNA-directed RNA polymerase, omega subunit TIGRFAM: DNA-directed RNA polymerase, omega subunit PFAM: RNA polymerase Rpb6 KEGG: bmb:BruAb1_0668 RpoZ, DNA-directed RNA polymerase, omega subunit
[B] Rhizobium lotiRHILO06084  UniProtKB/Swiss-Prot RPOZ_RHILO  RNA polymerase omega subunit
[B] Agrobacterium radiobacter (strain K84 / ATCC BAA-868)AGRRK01187  UniProtKB/Swiss-Prot RPOZ_AGRRK  DNA-directed RNA polymerase, omega subunit
[B] Agrobacterium tumefaciens (strain C58 / ATCC 33970)AGRT501009  UniProtKB/Swiss-Prot RPOZ_AGRT5  DNA-directed RNA polymerase subunit omega
[B] Rhizobium etli (strain CFN 42 / ATCC 51251)RHIEC01350  UniProtKB/Swiss-Prot RPOZ_RHIEC  DNA-directed RNA polymerase omega chain protein similar to rpoZ (SMc02408) [Sinorhizobium meliloti] and rpoZ (Atu1029) [Agrobacterium tumefaciens str. C58] Similar to entrez-protein:Q92R52 Putative location:bacterial cytoplasm Psort-Score: 0.1229; go_function: transferase activity [goid 0016740]; go_function: DNA binding [goid 0003677]; go_function: DNA-directed RNA polymerase activity [goid 0003899]; go_process: transcription [goid 0006350]; go_process: transcription, DNA-dependent [goid 0006351]
[B] Rhizobium etli (strain CIAT 652)RHIE601432  UniProtKB/Swiss-Prot RPOZ_RHIE6  DNA-directed RNA polymerase omega chain protein
[B] Rhizobium leguminosarum bv. trifolii (strain WSM2304)RHILW00979  UniProtKB/Swiss-Prot RPOZ_RHILW  DNA-directed RNA polymerase subunit omega
[B] Rhizobium leguminosarum bv. viciae (strain 3841)RHIL301510  UniProtKB/Swiss-Prot RPOZ_RHIL3  putative polymerase N-terminus to codon 92 is similar to Salmonella typhi RpoZ DNA-directed RNA polymerase omega chain (ec 2.7.7.6) (RnaP omega subunit) (transcriptase omega chain) (RNA polymerase omega subunit). UniProt:RPOZ_ECOLI (EMBL:AE005592) (91 aa), and to Agrobacterium tumefaciens (strain C58/ATCC 33970) RpoZ DNA-directed RNA polymerase omega chain (ec 2.7.7.6) (RnaP omega subunit) (transcriptase omega chain) (RNA polymerase omega subunit). UniProt:RPOZ_AGRT5 (EMBL:AE008033) (129 aa) similarity:fasta; with=UniProt:RPOZ_ECOLI (EMBL:AE005592); Salmonella typhi.; rpoZ; DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (RNAP omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit).; length=91; id 39.130; 92 aa overlap; query 1-91; subject 1-89 similarity:fasta; with=UniProt:RPOZ_AGRT5 (EMBL:AE008033); Agrobacterium tumefaciens (strain C58/ATCC 33970).; rpoZ; DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (RNAP omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit).; length=129; id 86.567; 134 aa overlap; query 1-134; subject 1-129
[B] Rhizobium melilotiRHIME01051  UniProtKB/Swiss-Prot RPOZ_RHIME  Product confidence : putative Gene name confidence : putative predicted by Codon_usage predicted by Homology predicted by FrameD PUTATIVE DNA-DIRECTED RNA POLYMERASE OMEGA CHAIN PROTEIN
[B] Sinorhizobium medicae (strain WSM419)SINMW00670  UniProtKB/Swiss-Prot RPOZ_SINMW  DNA-directed RNA polymerase subunit omega
[B] Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)AZOC501248  UniProtKB/Swiss-Prot RPOZ_AZOC5  RNA polymerase omega subunit
[B] Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)XANP203740  UniProtKB/Swiss-Prot RPOZ_XANP2  DNA-directed RNA polymerase, omega subunit