List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 134639

integration host factor alpha
This group has 11 members: 11 [B]acteria
Fingerprint: GFSNNLC

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Rickettsia akari (strain Hartford)RICAH01005  UniProtKB/TrEMBL A8GPM1  Integration host factor alpha-subunit
[B] Rickettsia bellii (strain OSU 85-389)RICB801252  UniProtKB/TrEMBL A8GXU9  Integration host factor alpha-subunit
[B] Rickettsia bellii (strain RML369-C)RICBR00179   ABE04262.1  Integration host factor alpha-subunit
[B] Rickettsia felisRICFE00193  UniProtKB/Swiss-Prot HLP_RICFE  Integration host factor alpha-subunit
[B] Rickettsia massiliae (strain Mtu5)RICM500776  UniProtKB/TrEMBL A8F2K0  Integration host factor alpha-subunit
[B] Rickettsia prowazekiiRICPR00670  UniProtKB/Swiss-Prot HLP_RICPR  INTEGRATION HOST FACTOR ALPHA-SUBUNIT (himA)
[B] Rickettsia rickettsii (strain Iowa)RICRO01111  UniProtKB/TrEMBL B0BUY3  integration host factor alpha-subunit
[B] Rickettsia rickettsii (strain Sheila Smith)RICRS01074  UniProtKB/TrEMBL A8GTE5  Integration host factor alpha-subunit
[B] Rickettsia typhiRICTY00672  UniProtKB/Swiss-Prot HLP_RICTY  integration host factor alpha subunit
[B] Rickettsia conoriiRICCN01088  UniProtKB/Swiss-Prot HLP_RICCN  Histone-like DNA-binding protein
[B] Desulfotalea psychrophilaDESPS01422  UniProtKB/TrEMBL Q6ANC3  related to integration host factor, alpha subunit