List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 68209

diguanylate cyclase with PAS/PAC sensor
This group has 11 members: 11 [B]acteria
Fingerprint: VFANEAF

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Acidobacteria bacterium (strain Ellin345)ACIBL01954  UniProtKB/TrEMBL Q1IQ89  diguanylate cyclase with PAS/PAC sensor
[B] Roseiflexus castenholzii (strain DSM 13941 / HLO8)ROSCS01118  UniProtKB/TrEMBL A7NIG0  diguanylate cyclase with PAS/PAC sensor KEGG: rrs:RoseRS_0589 diguanylate cyclase with PAS/PAC sensor TIGRFAM: PAS sensor protein; diguanylate cyclase PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein SMART: PAS domain containing protein
[B] Rhodopseudomonas palustrisRHOPA03817  UniProtKB/TrEMBL Q6N362  putative diguanylate cyclase (GGDEF) with PAS/PAC domain
[B] Rhodopseudomonas palustris (strain TIE-1)RHOPT04289  UniProtKB/TrEMBL B3QI56  Diguanylate cyclase with PAS/PAC sensor
[B] Geobacter sulfurreducensGEOSL02919  UniProtKB/TrEMBL Q748N2  Sensory box/GGDEF family protein
[B] Colwellia psychrerythraea (strain 34H / ATCC BAA-681)COLP301264  UniProtKB/TrEMBL Q486E7  identified by similarity to GB:AAO54868.1; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 sensory box/GGDEF domain protein
[B] Pseudomonas syringae (pv. tomato)PSESM01262  UniProtKB/TrEMBL Q887F0  similar to SP:P21979; identified by sequence similarity; putative sensory box/GGDEF domain protein
[B] Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6)PSE1401152  UniProtKB/TrEMBL Q48M78  identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 sensory box-containing diguanylate cyclase, putative
[B] Pseudomonas syringae pv. syringae (strain B728a)PSEU201146  UniProtKB/TrEMBL Q4ZXB1  PAS:GGDEF
[B] Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris)LEPBP03296  UniProtKB/TrEMBL B0SRF4  Putative uncharacterized protein
[B] Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames)LEPBA03182  UniProtKB/TrEMBL B0SHT4  GGDEF domain protein