List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 95081

response regulator identified by match to protein family
This group has 8 members: 8 [B]acteria
Fingerprint: ARYRYLC

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670)ACIC500113  UniProtKB/TrEMBL C1F8J3  Response regulator/GGDEF domain protein
[B] Solibacter usitatus (strain Ellin6076)SOLUE04516  UniProtKB/TrEMBL Q01XP0  response regulator receiver modulated diguanylate cyclase TIGRFAM: diguanylate cyclase PFAM: GGDEF domain containing protein; response regulator receiver KEGG: gsu:GSU2313 response regulator
[B] Synechococcus sp. (strain JA-2-3B'a(2-13))SYNJB02181  UniProtKB/TrEMBL Q2JJF5  response regulator identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254
[B] Synechococcus sp. (strain JA-3-3Ab)SYNJA02442  UniProtKB/TrEMBL Q2JRL9  response regulator identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254
[B] Syntrophomonas wolfei subsp. wolfei (strain Goettingen)SYNWW00557  UniProtKB/TrEMBL Q0AZC5  Response regulator receiver protein
[B] Maricaulis maris (strain MCS10)MARMM00119  UniProtKB/TrEMBL Q0ATH2  Diguanylate cyclase
[B] Thiobacillus denitrificans (strain ATCC 25259)THIDA01038  UniProtKB/TrEMBL Q3SK04  Putative diguanylate cyclase (GGDEF domain)
[B] Geobacter sulfurreducensGEOSL02275  UniProtKB/TrEMBL Q74AN9  Response regulator