List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 346266

neuraminidase B
This group has 7 members: 7 [B]acteria
Fingerprint: PTLIHAN

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Streptococcus pneumoniaeSTRPN01554  UniProtKB/Swiss-Prot NANB_STRPN  neuraminidase B
[B] Streptococcus pneumoniae (strain ATCC BAA-255 / R6)STRR601522  UniProtKB/TrEMBL Q8CWP8  Sialidase B precursor (neuraminidase B)
[B] Streptococcus pneumoniae (strain CGSP14)STRPS01644  UniProtKB/TrEMBL B2IRU3  Neuraminidase B
[B] Streptococcus pneumoniae (strain JJA)STRZJ01499  UniProtKB/TrEMBL C1CFQ7  Sialidase B
[B] Streptococcus pneumoniae (strain P1031)STRZP01560  UniProtKB/TrEMBL C1CM25  Sialidase B
[B] Streptococcus pneumoniae serotype 19F (strain G54)STRP401566  UniProtKB/TrEMBL B5E736  Neuraminidase B
[B] Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466)STRP201419  UniProtKB/TrEMBL Q04J83  sialidase B precursor neuraminidase B; equivalent gene in S.pneumoniae TIGR4 = SP1687; equivalent gene in S.pneumoniae R6 = spr1531; identified by match to protein family HMM PF02012; match to protein family HMM PF02973