List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 272062

This group has 5 members: 5 [E]ukaryota
Fingerprint: PSESHSA

Protein List | Alignment | Close Groups | Phyletic Profile Download: download fasta, download darwin

[E] Oryza sativaORYSA23000  UniProtKB/TrEMBL Q94HZ1  Protein of unknown function DUF604 family protein ab initio prediction with EST support contains InterPro domain(s): IPR006740
[E] Sorghum bicolorSORBI05883   4742437  jgi|Sorbi1|4742437|estExt_Genewise1.C_chr_13618
[E] Populus trichocarpaPOPTR00574  UniProtKB/TrEMBL B9GJK4  jgi|Poptr1_1|177112|gw1.I.5712.1
[E] Arabidopsis thalianaARATH03118  UniProtKB/TrEMBL Q9C881  fringe-related protein, + weak similarity to Fringe (Schistocerca gregaria)(GI:6573138);Fringe encodes an extracellular protein that regulates Notch signalling; go_component: chloroplast [goid GO:0009507@[IEA]; GO:0016020@[IEA]; GO:0016757@[ISS]] [evidence IEA]; go_function: transferase activity, transferring glycosyl groups [goid GO:0016757] [evidence ISS] transferase, transferring glycosyl groups
[E] Vitis viniferaVITVI10578  UniProtKB/TrEMBL A7QIZ5