List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA Group 387790
putative large multi-functional protein
This group has 2 members: 2 [B]acteria
Fingerprint: PGRKECE
| [B] Streptomyces coelicolor | STRCO00490 | Q8CK54 | SCF6.01, possible multi-domain protein, (fragment), len: >152 aa. Highly similar to Amycolatopsis orientalis TR:CAB45032 (EMBL; AL078635) putative large multi-functional protein (987 aa), fasta scores opt: 595 z-score: 714.7 E(): 1.9e-32 58.6% identity in 152 aa overlap. SCF34.24, possible large, multifunctional secreted protein, partial CDS, len: >891 aa; contains a region of weak similarity to members of the glycosyl hydrolase family at approx. aa 700-890 e.g. to part of SW:CTA2_BACCI (EMBL:D88360), Cit, Bacillus circulans cycloisomaltooligosaccharide glucanotransferase precursor (964 aa), fasta scores; opt: 279 z-score: 292.6 E(): 6.1e-09, 33.3% identity in 213 aa overlap and region of very weak similarity at approx. aa 200-400 to part of a dehydrogenase SW:SNDH_ACELI (EMBL:D28511) Acetobacter liquefaciens L-sorbosone dehydrogenase (449 aa) (26.2% identity in 279 aa overlap). Similar to CZA382.11 (EMBL:AL078635) Amycolatopsis orientalis possible large, multifunctional protein (987 aa) (63.2% identity in 880 aa overlap). Contains a probable N-terminal signal sequence putative large, multifunctional secreted protein |
| [B] Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) | STRGG06815 | B1VPM1 | Putative large multi-functional protein |