List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 328527

Glycoside hydrolase family 20
This group has 6 members: 6 [B]acteria
Fingerprint: PAFRIRG

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Bacteroides fragilisBACFR01723  UniProtKB/TrEMBL Q84IE2  similar to gp:AE016927_189 [Bacteroides thetaiotaomicron VPI-5482], percent identity 73 in 670 aa, BLASTP E(): 0.0 beta-N-acetylhexosaminidase
[B] Bacteroides fragilis (strain ATCC 25285 / NCTC 9343)BACFN01723  UniProtKB/TrEMBL Q5LEE5  Identical to previously sequenced Bacteroides fragilis beta-N-acetylhexoosaminidase NahA SWALL:Q84IE2 (EMBL:AB102772) (670 aa) fasta scores: E(): 0, 99.55% id in 670 aa, and similar to Bacteroides thetaiotaomicron beta-hexosaminidase precursor BT0456 SWALL:Q8AAK8 (EMBL:AE016927) (670 aa) fasta scores: E(): 7.6e-210, 73.73% id in 670 aa, and to Porphyromonas gingivalis beta-hexosaminidase precursor NahA SWALL:HEXA_PORGI (SWALL:P49008) (777 aa) fasta scores: E(): 1.7e-17, 27.23% id in 503 aa beta-N-acetylhexoosaminidase
[B] Bacteroides thetaiotaomicronBACTN00453  UniProtKB/TrEMBL Q8AAK8  Beta-hexosaminidase
[B] Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154)BACV803929  UniProtKB/TrEMBL A6L7T0  Glycoside hydrolase family 20
[B] Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)PARD802843  UniProtKB/TrEMBL A6LG41  Glycoside hydrolase family 20
[B] Akkermansia muciniphila (strain ATCC BAA-835)AKKM801785  UniProtKB/TrEMBL B2UN22  Beta-N-acetylhexosaminidase precursor