List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 52980

signal recognition particle
This group has 16 members: 5 [E]ukaryota 11 [B]acteria
Fingerprint: NVEIGIT

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[E] Ostreococcus lucimarinusOSTLU00085  UniProtKB/TrEMBL A4RQK2  IISP family transporter: signal recognition particle protein (SRP54) go_component: signal recognition particle (sensu Eukaryota); go_function: RNA binding; GTP binding; go_process: SRP-dependent cotranslational protein-membrane targeting; protein targeting
[E] Oryza sativaORYSA23632   BAF27626.1  Signal recognition particle 54 kDa protein, chloroplast precursor (SRP54) (54 chloroplast protein) (54CP) (FFC) contains InterPro domain(s): IPR000897, IPR004125, IPR003593, IPR004780 has GO asignment(s): GO:0000166, GO:0003723, GO:0005525, GO:0005786, GO:0006605, GO:0006614 similar to P37107 supported by AK058576
[E] Sorghum bicolorSORBI34521  UniProtKB/TrEMBL C5YS38  jgi|Sorbi1|5059341|Sb08g003410
[E] Arabidopsis thalianaARATH20624  UniProtKB/Swiss-Prot SR54C_ARATH  signal recognition particle 54 kDa protein, chloroplast / 54 chloroplast protein / SRP54 (FFC), identical to Swiss-Prot:P37107 signal recognition particle 54 kDa protein, chloroplast precursor (SRP54) (54 chloroplast protein) (54CP) (FFC) (Arabidopsis thaliana); go_component: signal recognition particle (sensu Eukaryota) [goid GO:0005515@[IPI]; GO:0005786@[NR]] [evidence ISS]; go_component: chloroplast stroma [goid GO:0009570] [evidence IDA]; go_function: mRNA binding [goid GO:0003729] [evidence ISS]; go_function: GTP binding [goid GO:0005525] [evidence ISS]; go_function: 7S RNA binding [goid GO:0008312] [evidence ISS]; go_function: signal sequence binding [goid GO:0005048] [evidence IDA]; go_process: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition [goid GO:0006617] [evidence ISS]; go_process: protein import into chloroplast thylakoid membrane [goid GO:0045038] [evidence IDA] FFC (FIFTY-FOUR CHLOROPLAST HOMOLOGUE); 7S RNA binding / GTP binding / mRNA binding
[E] Vitis viniferaVITVI03966  UniProtKB/TrEMBL A7PPC4  
[B] Chlamydia pneumoniaeCHLPN00364  UniProtKB/TrEMBL Q9Z966  Signal Recognition Particle GTPase
[B] Streptococcus pyogenes serotype M1STRP101450  UniProtKB/TrEMBL Q99ZK1  Putative signal recognition particle
[B] Campylobacter concisus (strain 13826)CAMC101128  UniProtKB/TrEMBL A7ZDY1  Signal recognition particle protein
[B] Campylobacter curvus (strain 525.92)CAMC501250  UniProtKB/TrEMBL A7GZB4  Signal recognition particle protein
[B] Campylobacter fetus subsp. fetus (strain 82-40)CAMFF00990  UniProtKB/TrEMBL A0RPS0  signal recognition particle protein identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959
[B] Campylobacter jejuni (strain RM1221)CAMJR00782  UniProtKB/TrEMBL Q5HV72  identified by similarity to SP:P37105; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 signal recognition particle protein
[B] Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176)CAMJJ00676  UniProtKB/TrEMBL A1VZ64  signal recognition particle protein identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959
[B] Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828)CAMJ800670  UniProtKB/TrEMBL A8FLD8  Signal recognition particle protein
[B] Helicobacter hepaticusHELHP00937  UniProtKB/TrEMBL Q7VHM6  signal recognition particle protein
[B] Phytoplasma australiensePHYAS00766  UniProtKB/TrEMBL B1VB37  Signal recognition particle GTPase
[B] Mycoplasma pneumoniaeMYCPN00061  UniProtKB/Swiss-Prot SRP54_MYCPN  Signal recognition particle protein