List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 190755

phosphorylase KEGG: mmc:Mmcs_1232 pyrimidine-nucleoside phosphorylase TIGRFAM: pyrimidine-nucleoside phosphorylase PFAM: glycosyl transferase
This group has 18 members: 18 [B]acteria
Fingerprint: ILLRGMD

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Mycobacterium avium (strain 104)MYCA104048  UniProtKB/TrEMBL A0QKJ5  thymidine phosphorylase identified by match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM PF07831; match to protein family HMM TIGR02644
[B] Mycobacterium paratuberculosisMYCPA03407  UniProtKB/TrEMBL Q73UC9  DeoA
[B] Mycobacterium gilvum (strain PYR-GCK)MYCGI04731  UniProtKB/TrEMBL A4TEW2  thymidine phosphorylase KEGG: mmc:Mmcs_1232 pyrimidine-nucleoside phosphorylase TIGRFAM: pyrimidine-nucleoside phosphorylase PFAM: glycosyl transferase, family 3; Pyrimidine nucleoside phosphorylase, C-terminal domain
[B] Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)MYCS201555  UniProtKB/TrEMBL A0QT13  Pyrimidine-nucleoside phosphorylase
[B] Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1)MYCVP01527  UniProtKB/TrEMBL A1T5H0  pyrimidine-nucleoside phosphorylase KEGG: mmc:Mmcs_1232 pyrimidine-nucleoside phosphorylase TIGRFAM: pyrimidine-nucleoside phosphorylase PFAM: glycosyl transferase, family 3; Pyrimidine nucleoside phosphorylase, C-terminal domain
[B] Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216)KINRD03907  UniProtKB/TrEMBL A6WF18  Pyrimidine-nucleoside phosphorylase
[B] Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382)CLAM300997  UniProtKB/TrEMBL A5CPM1  DeoA protein
[B] Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667)CLAMS02741  UniProtKB/TrEMBL B0RBN2  Thymidine phosphorylase
[B] Salinispora arenicola (strain CNS-205)SALAI00738  UniProtKB/TrEMBL A8M2Q7  Pyrimidine-nucleoside phosphorylase
[B] Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440)SALTO00804  UniProtKB/TrEMBL A4X339  Thymidine phosphorylase
[B] Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350)STRGG02522  UniProtKB/TrEMBL B1W2W4  Putative thymidine phosphorylase
[B] Rhodopirellula balticaRHOBA05611  UniProtKB/TrEMBL Q7UFA6  PMID: 8987664 PMID: 9817849 PMID: 8987664 best DB hits: BLAST: pdb:1BRW; B Chain B, The Crystal Structure Of Pyrimidine; E=3e-70 swissprot:P77836; PDP_BACST PYRIMIDINE-NUCLEOSIDE PHOSPHORYLASE; E=3e-69 swissprot:O53366; DEOA_MYCTU THYMIDINE PHOSPHORYLASE (TDRPASE); E=1e-68 COG: Rv3314c; COG0213 Thymidine phosphorylase; E=1e-69 PFAM: PF02885; Glycosyl transferase family,; E=1.4e-15 PF00591; Glycosyl transferase family,; E=6.1e-39 pyrimidine-nucleoside phosphorylase (PYNP)
[B] Bdellovibrio bacteriovorusBDEBA03530  UniProtKB/TrEMBL Q6MGR7  hypothetical protein pyrimidine-nucleoside phosphorylase
[B] Mesoplasma florumMESFL00119  UniProtKB/TrEMBL Q6F1Z8  thymidine phosphorylase
[B] Mycoplasma genitaliumMYCGE00049  UniProtKB/Swiss-Prot TYPH_MYCGE  Thymidine phosphorylase
[B] Mycoplasma mobileMYCMO00536  UniProtKB/TrEMBL Q6KHA8  COG0213; expression validated by proteogenomic mapping: 44 unique peptides covering 64.9% of sequence pyrimidine (thymidine)-nucleoside phosphorylase
[B] Mycoplasma penetransMYCPE00105  UniProtKB/TrEMBL Q8EWU6  thymidine phosphorylase
[B] Mycoplasma pneumoniaeMYCPN00064  UniProtKB/Swiss-Prot TYPH_MYCPN  Thymidine phosphorylase