List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 24775

alanine racemase domain protein PFAM: alanine racemase domain protein KEGG: mmc:Mmcs_3251 protein of unknown function UPF0001
This group has 29 members: 2 [E]ukaryota 27 [B]acteria
Fingerprint: AENREQE

Protein List | Alignment | Close Groups | Phyletic Profile Download: download fasta, download darwin

[E] Laccaria bicolorLACBI02281   e_gwh1.4.874.1  jgi|Lacbi1|231034|e_gwh1.4.874.1
[E] Cryptococcus neoformansCRYNE04187  UniProtKB/TrEMBL Q5KBT3  conserved hypothetical protein
[B] Corynebacterium jeikeium (strain K411)CORJK00710  UniProtKB/TrEMBL Q4JW90  H conserved hypothetical protein
[B] Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109)CORU701193  UniProtKB/TrEMBL B1VHB9  Putative uncharacterized protein
[B] Mycobacterium avium (strain 104)MYCA102192  UniProtKB/TrEMBL A0QF58  conserved hypothetical protein identified by match to protein family HMM TIGR00044
[B] Mycobacterium paratuberculosisMYCPA01875  UniProtKB/TrEMBL Q73YR3  hypothetical protein
[B] Mycobacterium gilvum (strain PYR-GCK)MYCGI02907  UniProtKB/TrEMBL A4TBE1  alanine racemase domain protein PFAM: alanine racemase domain protein KEGG: mmc:Mmcs_3251 protein of unknown function UPF0001
[B] Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)MYCS203972  UniProtKB/TrEMBL A0R009  Hypothetical protein
[B] Mycobacterium sp. (strain JLS)MYCSJ03197  UniProtKB/TrEMBL A3Q1L3  alanine racemase domain protein PFAM: alanine racemase domain protein KEGG: mmc:Mmcs_3251 protein of unknown function UPF0001
[B] Mycobacterium sp. (strain KMS)MYCSK03240  UniProtKB/TrEMBL A1UI49  alanine racemase domain protein PFAM: alanine racemase domain protein KEGG: mmc:Mmcs_3251 protein of unknown function UPF0001
[B] Mycobacterium sp. (strain MCS)MYCSS03215  UniProtKB/TrEMBL Q1B6X6  Hypothetical protein
[B] Mycobacterium bovisMYCBO02164  UniProtKB/Swiss-Prot Y2172_MYCBO  Mb2172c, -, len: 258 aa. Equivalent to Rv2148c, len: 258 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 258 aa overlap). Conserved hypothetical protein; should belong to the YGGS/YBL036C/F09E5.8 family. FASTA best: AB003132|AB003132_5 Corynebacterium glutamicum gene (221 aa) opt: 440, E(): 2.3e-23; 42.8% identity in 236 aa overlap; and YPI1_VIBAL P52055 hypothetical protein in pilt-proc intergenic region in Vibrio alginolyticus. opt: 266, E(): 1.8e-11; 27.9% identity in 244 aa overlap. CONSERVED HYPOTHETICAL PROTEIN
[B] Mycobacterium bovis (strain BCG / Paris 1173P2)MYCBP02138  UniProtKB/TrEMBL A1KKJ1  Hypothetical protein BCG_2165c
[B] Mycobacterium tuberculosisMYCTU03303  UniProtKB/Swiss-Prot Y2148_MYCTU  UPF0001 protein Rv2148c/MT2207
[B] Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra)MYCTA02184  UniProtKB/TrEMBL A5U4H5  Putative uncharacterized protein
[B] Mycobacterium tuberculosis (strain F11)MYCTF02103   EAX14005.1  conserved hypothetical protein Mapped to H37Rv Rv2148c
[B] Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1)MYCVP03403  UniProtKB/TrEMBL A1TAW3  alanine racemase domain protein PFAM: alanine racemase domain protein KEGG: mmc:Mmcs_3251 protein of unknown function UPF0001
[B] Rhodococcus opacus (strain B4)RHOOB00811  UniProtKB/TrEMBL C1AU50  Putative uncharacterized protein
[B] Rhodococcus sp. (strain RHA1)RHOSR01055  UniProtKB/TrEMBL Q0SHS6  Putative uncharacterized protein
[B] Frankia alni (strain ACN14a)FRAAA02139  UniProtKB/TrEMBL Q0RNN5  putative enzyme with PLP-binding domain Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type e : enzyme
[B] Frankia sp. (strain CcI3)FRASC01379  UniProtKB/TrEMBL Q2JD45  Protein of unknown function UPF0001
[B] Frankia sp. (strain EAN1pec)FRASN04928  UniProtKB/TrEMBL A8KZ95  Putative enzyme with PLP-binding domain
[B] Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216)KINRD03158  UniProtKB/TrEMBL A6WCW9  Alanine racemase domain protein
[B] Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382)CLAM301874  UniProtKB/TrEMBL A5CS47  Putative uncharacterized protein
[B] Arthrobacter aurescens (strain TC1)ARTAT01637  UniProtKB/TrEMBL A1R5G3  Putative alanine racemase, N-terminal domain protein
[B] Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360)ARTCA01559  UniProtKB/TrEMBL B8HGX5  Alanine racemase domain protein
[B] Arthrobacter sp. (strain FB24)ARTS201565  UniProtKB/TrEMBL A0JV99  Protein of unknown function UPF0001 TIGRFAM: Protein of unknown function UPF0001 PFAM: alanine racemase domain protein KEGG: tfu:Tfu_1115 protein of unknown function UPF0001
[B] Saccharopolyspora erythraea (strain NRRL 23338)SACEN05612  UniProtKB/TrEMBL A4FLU2  Pyridoxal-5'-phosphate dependent enzyme
[B] Burkholderia xenovorans (strain LB400)BURXL00471  UniProtKB/TrEMBL Q145H1  Putative uncharacterized protein