List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 300782

radical SAM domain protein
This group has 37 members: 5 [A]rchaea 32 [B]acteria
Fingerprint: KFSLDSA

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[A] Methanospirillum hungatei (strain JF-1 / DSM 864)METHJ02034  UniProtKB/TrEMBL Q2FSV0  Radical SAM
[A] Methanosaeta thermophila (strain DSM 6194 / PT)METTP00105  UniProtKB/TrEMBL A0B5D6  Radical SAM domain protein PFAM: Radical SAM domain protein KEGG: mhu:Mhun_2156 radical SAM
[A] Methanococcoides burtonii (strain DSM 6242)METBU01030  UniProtKB/TrEMBL Q12WV2  Fe-S protein, radical SAM family
[A] Methanosarcina barkeri (strain Fusaro / DSM 804)METBF00802  UniProtKB/TrEMBL Q46E87  Fe-S oxidoreductase
[A] Methanopyrus kandleriMETKA01057  UniProtKB/TrEMBL Q8TWH6  Fe-S oxidoreductase
[B] Sulfurihydrogenibium sp. (strain YO3AOP1)SULSY00521  UniProtKB/TrEMBL B2V8A5  Radical SAM domain protein
[B] Chlorobaculum parvum (strain NCIB 8327)CHLP801508  UniProtKB/TrEMBL B3QPT3  Radical SAM domain protein
[B] Chlorobium tepidumCHLTE01416  UniProtKB/TrEMBL Q8KCI1  MoaA/nifB/pqqE family protein
[B] Chlorobium chlorochromatii (strain CaD3)CHLCH00676  UniProtKB/TrEMBL Q3ASR6  MoaA/NifB/PqqE family protein
[B] Chlorobium limicola (strain DSM 245 / NBRC 103803)CHLL201590  UniProtKB/TrEMBL B3EE07  Radical SAM domain protein
[B] Chlorobium phaeobacteroides (strain DSM 266)CHLPD01743  UniProtKB/TrEMBL A1BHI7  Radical SAM domain protein PFAM: Radical SAM domain protein SMART: Elongator protein 3/MiaB/NifB KEGG: plt:Plut_1460 elongator protein 3/MiaB/NifB
[B] Prosthecochloris vibrioformis (strain DSM 265)PROVI01250  UniProtKB/TrEMBL A4SFM3  Radical SAM domain protein PFAM: Radical SAM domain protein SMART: Elongator protein 3/MiaB/NifB KEGG: plt:Plut_1460 elongator protein 3/MiaB/NifB
[B] Chloroherpeton thalassium (strain ATCC 35110 / GB-78)CHLT300110  UniProtKB/TrEMBL B3QST9  Radical SAM domain protein
[B] Pelodictyon luteolum (strain DSM 273)PELLD01419  UniProtKB/TrEMBL Q3B2W2  Elongator protein 3/MiaB/NifB
[B] Clostridium tetaniCLOTE00402  UniProtKB/TrEMBL Q898F6  Fe-S oxidoreductase
[B] Syntrophus aciditrophicus (strain SB)SYNAS02513  UniProtKB/TrEMBL Q2LWG0  radical SAM superfamily protein
[B] Arcobacter butzleri (strain RM4018)ARCB401737  UniProtKB/TrEMBL A8EVQ2  Radical SAM domain protein
[B] Campylobacter concisus (strain 13826)CAMC101351  UniProtKB/TrEMBL A7ZEJ6  Radical SAM domain protein
[B] Campylobacter curvus (strain 525.92)CAMC501431  UniProtKB/TrEMBL A7GZU6  Radical SAM domain protein
[B] Campylobacter fetus subsp. fetus (strain 82-40)CAMFF01378  UniProtKB/TrEMBL A0RQV8  radical SAM domain protein identified by match to protein family HMM PF04055
[B] Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A)CAMHC01198  UniProtKB/TrEMBL A7I2S9  Radical SAM domain protein
[B] Campylobacter jejuniCAMJE01178  UniProtKB/TrEMBL A3YNA9  Putative radical SAM domain protein
[B] Campylobacter jejuni (strain RM1221)CAMJR01336  UniProtKB/TrEMBL Q5HTL8  identified by match to protein family HMM PF04055 radical SAM domain protein
[B] Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97)CAMJD00378  UniProtKB/TrEMBL A7H2D7  Radical SAM domain protein
[B] Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176)CAMJJ01190  UniProtKB/TrEMBL A1W0M8  radical SAM domain protein identified by match to protein family HMM PF04055
[B] Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828)CAMJ801181  UniProtKB/TrEMBL A8FMU9  Radical SAM domain protein
[B] Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060)CAMLR00497  UniProtKB/TrEMBL B9KFN0  Putative uncharacterized protein
[B] Helicobacter pyloriHELPY00115  UniProtKB/Swiss-Prot Y117_HELPY  similar to GB:L77117 SP:Q58708 PID:1591951 percent identity: 34.23; identified by sequence similarity; putative conserved hypothetical protein
[B] Helicobacter pylori (strain HPAG1)HELPH00118  UniProtKB/TrEMBL Q1CV38  hypothetical protein
[B] Helicobacter pylori (strain Shi470)HELPS00109  UniProtKB/TrEMBL B2URU6  Putative uncharacterized protein
[B] Helicobacter pylori J99HELPJ00108  UniProtKB/Swiss-Prot Y117_HELPJ  Hypothetical UPF0026 protein JHP0109
[B] Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251)SULDN00630  UniProtKB/TrEMBL Q30SW9  Radical SAM
[B] Wolinella succinogenesWOLSU00347  UniProtKB/TrEMBL Q7MSJ9  conserved hypothetical protein
[B] Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH)NAUPA00640  UniProtKB/TrEMBL B9L8X4  Radical SAM domain protein
[B] Nitratiruptor sp. (strain SB155-2)NITSB00485  UniProtKB/TrEMBL A6Q290  MoaA/NifB/PqqE family protein
[B] Thermotoga maritimaTHEMA01271  UniProtKB/TrEMBL Q9X114  Putative uncharacterized protein
[B] Thermotoga sp. (strain RQ2)THESQ01506  UniProtKB/TrEMBL B1LC61  Radical SAM domain protein