List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 615

Ribonuclease M5
This group has 35 members: 35 [B]acteria
Fingerprint: LAQQKRG

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Bacillus amyloliquefaciens (strain FZB42)BACA200042  UniProtKB/TrEMBL A7Z0G4  RnmV
[B] Bacillus anthracisBACAN00035  UniProtKB/TrEMBL B0AWH0  similar to GB:X70991, PID:1206027, and PID:38460; identified by sequence similarity; putative primase-related protein
[B] Bacillus cereus (strain AH187)BACC700035  UniProtKB/TrEMBL B7HPV1  Primase-related protein
[B] Bacillus cereus (strain ATCC 10987)BACC100038  UniProtKB/TrEMBL Q73FG8  identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334 primase-related protein
[B] Bacillus cereus (strain ATCC 14579 / DSM 31)BACCR00033  UniProtKB/TrEMBL Q81JA6  Ribonuclease M5
[B] Bacillus cereus (strain G9842)BACC200035  UniProtKB/TrEMBL B7ISV0  Primase-related protein
[B] Bacillus cereus (strain ZK)BACCZ00034  UniProtKB/TrEMBL Q63HG8  ribonuclease M5
[B] Bacillus cereus subsp. cytotoxis (strain NVH 391-98)BACCN00034  UniProtKB/TrEMBL A7GJV2  Primase/topoisomerase like protein
[B] Bacillus clausii (strain KSM-K16)BACSK00069  UniProtKB/TrEMBL Q5WLW3  ribonuclease M5
[B] Bacillus haloduransBACHD00055  UniProtKB/TrEMBL Q9KGK5  BH0056 unknown conserved protein
[B] Bacillus licheniformis (strain DSM 13 / ATCC 14580)BACLD00045  UniProtKB/TrEMBL Q65PI0  InterProMatches:IPR004466; 5S ribosomal RNA maturation ribonuclease M5
[B] Bacillus pumilus (strain SAFR-032)BACP200025  UniProtKB/TrEMBL A8F908  Ribonuclease M5
[B] Bacillus subtilisBACSU00041  UniProtKB/Swiss-Prot YABF_BACSU  Hypothetical protein yabF
[B] Bacillus thuringiensis (strain Al Hakam)BACAH00034  UniProtKB/TrEMBL A0R8B3  ribonuclease M5
[B] Bacillus thuringiensis (subsp. konkukian)BACHK00034  UniProtKB/TrEMBL Q6HPX6  ribonuclease M5
[B] Bacillus weihenstephanensis (strain KBAB4)BACWK00035  UniProtKB/TrEMBL A9VN53  Primase/topoisomerase like protein
[B] Lysinibacillus sphaericus (strain C3-41)LYSSC00053  UniProtKB/TrEMBL B1HS81  Hypothetical yabF protein
[B] Oceanobacillus iheyensisOCEIH00049  UniProtKB/TrEMBL Q8EU41  CDS_ID OB0049 hypothetical protein
[B] Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15)EXIS200034  UniProtKB/TrEMBL B1YGN9  Primase/topoisomerase like protein
[B] Listeria innocuaLISIN00226  UniProtKB/TrEMBL Q92F80  similar to B. subtilis YabF protein
[B] Macrococcus caseolyticus (strain JCSC5402)MACCJ01922  UniProtKB/TrEMBL B9E8V9  Putative uncharacterized protein
[B] Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599)BREBN00089  UniProtKB/TrEMBL C0ZHC5  Probable 5S ribosomal RNA maturase
[B] Clostridium novyi (strain NT)CLONN02160  UniProtKB/TrEMBL A0Q3E8  primase-related protein identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334
[B] Enterococcus faecalisENTFA00849  UniProtKB/TrEMBL Q837A8  Primase-related protein
[B] Lactobacillus brevis (strain ATCC 367 / JCM 1170)LACBA00431  UniProtKB/TrEMBL Q03T57  Ribonuclease M5 (Toprim domain)
[B] Lactobacillus casei (strain ATCC 334)LACC302387  UniProtKB/TrEMBL Q034Q7  Ribonuclease M5 (Toprim domain)
[B] Lactobacillus casei (strain BL23)LACCB02637  UniProtKB/TrEMBL B3WAU2  Uncharacterized protein yabF
[B] Lactobacillus plantarumLACPL00385  UniProtKB/TrEMBL Q88Z94  unknown
[B] Lactobacillus reuteri (strain DSM 20016)LACRD00200  UniProtKB/TrEMBL A5VI08  Ribonuclease M5
[B] Lactobacillus reuteri (strain JCM 1112)LACRJ00197  UniProtKB/TrEMBL B2G5I7  conserved hypothetical protein
[B] Lactobacillus sakei subsp. sakei (strain 23K)LACSS01643  UniProtKB/TrEMBL Q38V21  Hypothetical primase-related protein
[B] Lactobacillus salivarius subsp. salivarius (strain UCC118)LACS100220  UniProtKB/TrEMBL Q1WV74  Ribonuclease M5 COG1658 [L] Small primase-like proteins (Toprim domain)
[B] Pediococcus pentosaceus (strain ATCC 25745 / 183-1w)PEDPA00254  UniProtKB/TrEMBL Q03HF7  Ribonuclease M5 (Toprim domain)
[B] Acholeplasma laidlawii (strain PG-8A)ACHLI00014  UniProtKB/TrEMBL A9NE78  Primase-like protein
[B] Mycoplasma genitaliumMYCGE00057  UniProtKB/Swiss-Prot Y057_MYCGE  Uncharacterized protein MG057