List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 317645

beta domain protein region
This group has 12 members: 12 [B]acteria
Fingerprint: SDLPFRV

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1)PELPB01596  UniProtKB/TrEMBL B4SB24  DNA polymerase beta domain protein region
[B] Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl)CHLSY02006  UniProtKB/TrEMBL B9LFV4  DNA polymerase beta domain protein region
[B] Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)CHLAA01854  UniProtKB/TrEMBL A9WDV5  DNA polymerase beta domain protein region
[B] Syntrophomonas wolfei subsp. wolfei (strain Goettingen)SYNWW00209  UniProtKB/TrEMBL Q0B0D1  Hypothetical protein
[B] Acidovorax sp. (strain JS42)ACISJ03772  UniProtKB/TrEMBL A1WD14  DNA polymerase, beta domain protein region PFAM: DNA polymerase, beta domain protein region KEGG: swo:Swol_0221 hypothetical protein
[B] Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ)GEOLS03512  UniProtKB/TrEMBL B3E333  DNA polymerase beta domain protein region
[B] Geobacter uraniumreducens (strain Rf4)GEOUR01998  UniProtKB/TrEMBL A5G3A8  DNA polymerase, beta domain protein region
[B] Coxiella burnetii (strain CbuG_Q212)COXB200850  UniProtKB/TrEMBL B6J067  Nucleotidyltransferase
[B] Haemophilus influenzaeHAEIN00073  UniProtKB/Swiss-Prot Y073_HAEIN  Uncharacterized protein HI0073
[B] Haemophilus influenzae (strain 86-028NP)HAEI800073  UniProtKB/TrEMBL Q4QPH1  Similar to: HI0073, Y073_HAEIN; nucleotidyltransferase family conserved hypothetical protein
[B] Haemophilus influenzae (strain PittEE)HAEIE00511  UniProtKB/TrEMBL A5UB66  Putative uncharacterized protein
[B] Haemophilus influenzae (strain PittGG)HAEIG00465  UniProtKB/TrEMBL A5UFN8  Nucleotidyltransferase