| [E] Ostreococcus lucimarinus | OSTLU06089 | A4S5U9 | predicted protein go_function: RNA binding; ribonuclease H activity |
| [B] Acidobacteria bacterium (strain Ellin345) | ACIBL02872 | RNH2_ACIBL | Ribonuclease H |
| [B] Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) | ACIC502650 | C1F3A8 | Ribonuclease HII |
| [B] Solibacter usitatus (strain Ellin6076) | SOLUE02516 | RNH2_SOLUE | Ribonuclease H PFAM: ribonuclease HII/HIII KEGG: aba:Acid345_2878 ribonuclease H |
| [B] Corynebacterium diphtheriae | CORDI01474 | RNH2_CORDI | Similar to Mycobacterium tuberculosis ribonuclease HII RnhB or Rv2902c or MT2970 or MTCY274.33c SW:RNH2_MYCTU (Q10793) (264 aa) fasta scores: E(): 2.8e-42, 56.71% id in 201 aa, and to Escherichia coli ribonuclease HII RnhB or B0183 SW:RNH2_ECOLI (P10442) (198 aa) fasta scores: E(): 2.1e-26, 46.48% id in 185 aa ribonuclease HII |
| [B] Corynebacterium efficiens | COREF01874 | RNH2_COREF | similar to AL583922-114|CAC30562.1| percent identity: 54 in 201 aa putative ribonuclease HII |
| [B] Corynebacterium glutamicum | CORGL02548 | RNH2_CORGL | Ribonuclease HII |
| [B] Corynebacterium glutamicum (strain R) | CORGB01892 | RNH2_CORGB | Hypothetical protein |
| [B] Corynebacterium jeikeium (strain K411) | CORJK01133 | RNH2_CORJK | Ribonuclease HII (EC 3.1.26.4) (RNase HII).,This enzyme is an endonuclease that degrades the RNA of RNA-DNA hybrids specifically (By similarity). |
| [B] Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) | CORU700804 | B1VG82 | Complete genome |
| [B] Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) | MYCA903193 | RNH2_MYCA9 | Ribonuclease |
| [B] Mycobacterium avium (strain 104) | MYCA103545 | RNH2_MYCA1 | ribonuclease HII identified by match to protein family HMM PF01351 |
| [B] Mycobacterium paratuberculosis | MYCPA02940 | RNH2_MYCPA | RnhB |
| [B] Mycobacterium gilvum (strain PYR-GCK) | MYCGI04067 | RNH2_MYCGI | RNase HII PFAM: ribonuclease HII/HIII KEGG: mmc:Mmcs_1972 ribonuclease H |
| [B] Mycobacterium leprae | MYCLE01604 | RNH2_MYCLE | Highly similar to many ribonucleases including: Brucella melitensis ribonuclease HII (EC 3.1.26.4) and Mycobacterium tuberculosis ribonuclease HII RV2902C SW:RNH2_MYCTU (Q10793) (264 aa); Fasta score E(): 0, 76.7% identity in 245 aa overlap. Contains Pfam match to entry PF01351 RNase_HII, Ribonuclease HII. Contains PS00017 ATP/GTP-binding site motif A (P-loop). ribonuclease HII |
| [B] Mycobacterium leprae (strain Br4923) | MYCLB01596 | RNH2_MYCLB | Ribonuclease |
| [B] Mycobacterium marinum (strain ATCC BAA-535 / M) | MYCMM01766 | RNH2_MYCMM | Ribonuclease HII protein RnhB |
| [B] Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) | MYCS202272 | RNH2_MYCS2 | Ribonuclease HII |
| [B] Mycobacterium sp. (strain JLS) | MYCSJ01910 | RNH2_MYCSJ | Ribonuclease H PFAM: ribonuclease HII/HIII KEGG: mmc:Mmcs_1972 ribonuclease H |
| [B] Mycobacterium sp. (strain KMS) | MYCSK01952 | RNH2_MYCSK | Ribonuclease H PFAM: ribonuclease HII/HIII KEGG: mmc:Mmcs_1972 ribonuclease H |
| [B] Mycobacterium sp. (strain MCS) | MYCSS01940 | RNH2_MYCSS | Ribonuclease H |
| [B] Mycobacterium bovis | MYCBO02917 | RNH2_MYCBO | Mb2926c, rnhB, len: 264 aa. Equivalent to Rv2902c, len: 264 aa, from Mycobacterium tuberculosis strain H37Rv, (99.6% identity in 264 aa overlap). Probable rnhB, ribonuclease HII (EC 3.1.26.4), equivalent to O33022|RNH2_MYCLE|RNHB|ML1611|MLCB250.40 RIBONUCLEASE HII from Mycobacterium leprae (240 aa), FASTA scores: opt: 1242, E(): 6.9e-72, (76.75% identity in 245 aa overlap). Also similar (but longer ~20 aa) to others e.g. Q9HXY9|RNHB|PA3642 RIBONUCLEASE HII from Pseudomonas aeruginosa (201 aa), FASTA scores: opt: 572, E(): 3.1e-29, (52.7% identity in 184 aa overlap); Q9PEI7|RNH2_XYLFA|RNHB|XF1041 RIBONUCLEASE HII from Xylella fastidiosa (234 aa), FASTA scores: opt: 556, E(): 3.6e-28, (50.25% identity in 185 aa overlap); P10442|RNH2_ECOLI|RNHB|B0183 RIBONUCLEASE HII from Escherichia coli strain K-12 (213 aa), FASTA scores: opt: 519, E(): 7.4e-26, (48.65% identity in 183 aa overlap); etc. BELONGS TO THE RNASE HII FAMILY. COFACTOR: MANGANESE (BY SIMILARITY). PROBABLE RIBONUCLEASE HII PROTEIN RNHB (RNASE HII) |
| [B] Mycobacterium bovis (strain BCG / Paris 1173P2) | MYCBP02897 | RNH2_MYCBP | Probable ribonuclease HII protein rnhB |
| [B] Mycobacterium tuberculosis | MYCTU04028 | RNH2_MYCTU | Ribonuclease HII |
| [B] Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) | MYCTA02954 | RNH2_MYCTA | Ribonuclease HII |
| [B] Mycobacterium tuberculosis (strain F11) | MYCTF02833 | A5WRF4 | ribonuclease HII protein rnhB (RNase HII) Mapped to H37Rv Rv2902c |
| [B] Mycobacterium ulcerans (strain Agy99) | MYCUA01684 | RNH2_MYCUA | ribonuclease HII protein RnhB cytoplasmic protein degrades the ribonucleotide moiety on RNA-DNA hybrid molecules [catalytic activity: endonucleolytic cleavage to 5'- phosphomonoester] |
| [B] Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) | MYCVP02105 | RNH2_MYCVP | Ribonuclease H PFAM: ribonuclease HII/HIII KEGG: mmc:Mmcs_1972 ribonuclease H |
| [B] Nocardia farcinica | NOCFA04149 | RNH2_NOCFA | putative RNase HII |
| [B] Rhodococcus erythropolis (strain PR4 / NBRC 100887) | RHOE402453 | RNH2_RHOE4 | Putative ribonuclease HII |
| [B] Rhodococcus opacus (strain B4) | RHOOB06591 | RNH2_RHOOB | Ribonuclease HII |
| [B] Rhodococcus sp. (strain RHA1) | RHOSR06452 | RNH2_RHOSR | Ribonuclease |
| [B] Frankia alni (strain ACN14a) | FRAAA05653 | RNH2_FRAAA | Endoribonuclease H. RNase H (RnhB) Evidence 2b : Function of strongly homologous gene; PubMedId : 6316347; Product type e : enzyme |
| [B] Frankia sp. (strain CcI3) | FRASC03478 | RNH2_FRASC | Ribonuclease H |
| [B] Frankia sp. (strain EAN1pec) | FRASN01131 | RNH2_FRASN | Ribonuclease |
| [B] Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) | KINRD01401 | RNH2_KINRD | Ribonuclease |
| [B] Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) | CLAM301392 | A5CQR6 | Ribonuclease |
| [B] Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) | CLAMS00735 | B0REN6 | Ribonuclease HII |
| [B] Leifsonia xyli (subsp. xyli) | LEIXX01165 | Q6AEA6 | identified by sequence similarity ribonuclease HII |
| [B] Arthrobacter aurescens (strain TC1) | ARTAT02332 | A1R7G1 | Putative ribonuclease HII |
| [B] Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) | RENSM01032 | A9WP51 | Ribonuclease HII |
| [B] Salinispora arenicola (strain CNS-205) | SALAI01170 | RNH2_SALAI | Ribonuclease |
| [B] Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) | SALTO01295 | RNH2_SALTO | Ribonuclease |
| [B] Nocardioides sp. (strain BAA-499 / JS614) | NOCSJ03184 | RNH2_NOCSJ | Ribonuclease H |
| [B] Saccharopolyspora erythraea (strain NRRL 23338) | SACEN05815 | RNH2_SACEN | Ribonuclease HII |
| [B] Phytoplasma sp. (strain STRAWB1) | STRAW02452 | RNH2_STRAW | Ribonuclease HII |
| [B] Streptomyces coelicolor | STRCO05777 | RNH2_STRCO | SC5B8.02, probable ribonuclease HII, len: 233 aa; si milar to many e.g. RNH2_ECOLI P10442 ribonuclease hii (EC 3 .1.26.4) (213 aa), fasta scores; opt: 444 z-score: 689.5 E( ): 3.2e-31, 42.5% identity in 179 aa overlap probable ribonuclease HII |
| [B] Thermobifida fusca (strain YX) | THEFY02136 | RNH2_THEFY | ribonuclease H |
| [B] Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) | RUBXD01369 | Q1AW72 | Ribonuclease H PFAM: ribonuclease HII/HIII KEGG: mbo:Mb2926c probable ribonuclease HII protein RnhB (RNase HII) |
| [B] Symbiobacterium thermophilum | SYMTH02000 | RNH22_SYMTH | ribonuclease HII |
| [B] Hydrogenobaculum sp. (strain Y04AAS1) | HYDS001038 | B4U9C0 | Ribonuclease H |
| [B] Sulfurihydrogenibium sp. (strain YO3AOP1) | SULSY00179 | RNH2_SULSY | Ribonuclease H |
| [B] Bacteroides fragilis | BACFR00290 | RNH2_BACFR | similar to gp:AE016940_113 [Bacteroides thetaiotaomicron VPI-5482], percent identity 88 in 198 aa, BLASTP E(): e-100 ribonuclease HII |
| [B] Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) | BACFN00235 | RNH2_BACFN | Similar to Escherichia coli ribonuclease HII RnhB or B0183 SWALL:RNH2_ECOLI (SWALL:P10442) (198 aa) fasta scores: E(): 2.6e-27, 51.13% id in 176 aa, and to Bacteroides thetaiotaomicron ribonuclease HII BT3412 SWALL:AAO78518 (EMBL:AE016940) (200 aa) fasta scores: E(): 3.8e-70, 87.87% id in 198 aa, and to Porphyromonas gingivalis ribonuclease HII RnhB SWALL:RNH2_PORGI (SWALL:Q51832) (168 aa) fasta scores: E(): 4.3e-38, 63.46% id in 156 aa putative ribonuclease HII |
| [B] Bacteroides thetaiotaomicron | BACTN03378 | RNH2_BACTN | Ribonuclease HII |
| [B] Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) | BACV801270 | RNH2_BACV8 | Ribonuclease HII |
| [B] Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) | PARD803434 | RNH2_PARD8 | Ribonuclease HII |
| [B] Porphyromonas gingivalis | PORGI00636 | RNH2_PORGI | similar to GB:M90060, SP:P43453, and PID:153574; identified by sequence similarity; putative ribonuclease HII |
| [B] Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) | PORG300727 | RNH2_PORG3 | Putative ribonuclease HII |
| [B] Amoebophilus asiaticus (strain 5a2) | AMOA500730 | ACE06211.1 | Putative uncharacterized protein |
| [B] Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) | FLAJ101917 | RNH2_FLAJ1 | Ribonuclease HII |
| [B] Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) | FLAPJ01162 | RNH2_FLAPJ | Ribonuclease HII |
| [B] Gramella forsetii (strain KT0803) | GRAFK02849 | RNH2_GRAFK | ribonuclease HII |
| [B] Salinibacter ruber (strain DSM 13855) | SALRD02296 | RNH2_SALRD | ribonuclease HII identified by match to protein family HMM PF01351 |
| [B] Chlamydia muridarum | CHLMU00291 | RNH2_CHLMU | identified by match to PFAM protein family HMM PF03826 ribonuclease HII |
| [B] Chlamydia trachomatis | CHLTR00030 | RNH2_CHLTR | Ribonuclease HII |
| [B] Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) | CHLTA00030 | RNH2_CHLTA | ribonuclease HII |
| [B] Chlamydia trachomatis (strain L2/434/Bu / ATCC VR902B) | CHLT200279 | RNH2_CHLT2 | Ribonuclease HII |
| [B] Chlamydia trachomatis (strain L2b/UCH-1/proctitis) | CHLTB00279 | RNH2_CHLTB | Ribonuclease HII |
| [B] Chlamydia pneumoniae | CHLPN00605 | RNH2_CHLPN | Ribonuclease HII |
| [B] Chlamydophila abortus | CHLAB00612 | RNH2_CHLAB | Similar to Bacillus subtilis ribonuclease HII RnhB or Rnh or BSU16060 SWALL:RNH2_BACSU (SWALL:O31744) (255 aa) fasta scores: E(): 6.1e-32, 50.74% id in 201 aa, and to Enterococcus faecalis ribonuclease HII RnhB or EF1653 SWALL:Q834J7 (EMBL:AE016952) (255 aa) fasta scores: E(): 1.1e-32, 49.28% id in 209 aa ribonuclease HII |
| [B] Chlamydophila caviae | CHLCV00642 | RNH2_CHLCV | similar to GB:U11020, PID:506786, and SP:P50931; identified by sequence similarity; putative ribonuclease HII |
| [B] Chlamydophila felis (strain Fe/C-56) | CHLFF00357 | RNH2_CHLFF | ribonuclease HII EC 3.1.26.4 |
| [B] Parachlamydia sp. (strain UWE25) (subsp. Acanthamoeba sp.) | PARUW00658 | RNH2_PARUW | similar to ribonuclease HII putative ribonuclease HII |
| [B] Chlorobaculum parvum (strain NCIB 8327) | CHLP800016 | RNH2_CHLP8 | Ribonuclease H |
| [B] Chlorobium tepidum | CHLTE02227 | RNH2_CHLTE | Ribonuclease HII |
| [B] Chlorobium chlorochromatii (strain CaD3) | CHLCH01950 | RNH2_CHLCH | ribonuclease HII |
| [B] Chlorobium phaeobacteroides (strain BS1) | CHLPB00018 | B3EJJ6 | Ribonuclease H |
| [B] Chlorobium phaeobacteroides (strain DSM 266) | CHLPD00026 | RNH2_CHLPD | Ribonuclease H PFAM: ribonuclease HII/HIII KEGG: cte:CT2261 ribonuclease HII |
| [B] Prosthecochloris vibrioformis (strain DSM 265) | PROVI00015 | RNH2_PROVI | Ribonuclease H PFAM: ribonuclease HII/HIII KEGG: plt:Plut_0011 ribonuclease H |
| [B] Chloroherpeton thalassium (strain ATCC 35110 / GB-78) | CHLT301374 | RNH2_CHLT3 | Ribonuclease H |
| [B] Pelodictyon luteolum (strain DSM 273) | PELLD00011 | RNH2_PELLD | Ribonuclease H |
| [B] Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) | PELPB00018 | RNH2_PELPB | Ribonuclease H |
| [B] Prosthecochloris aestuarii (strain DSM 271 / SK 413) | PROA200017 | B4S951 | Ribonuclease H |
| [B] Chloroflexus aggregans (strain MD-66 / DSM 9485) | CHLAD01785 | RNH2_CHLAD | Ribonuclease |
| [B] Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) | CHLSY01110 | RNH2_CHLSY | Ribonuclease |
| [B] Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) | CHLAA01012 | RNH2_CHLAA | Ribonuclease H precursor |
| [B] Roseiflexus castenholzii (strain DSM 13941 / HLO8) | ROSCS02496 | RNH2_ROSCS | Ribonuclease H PFAM: ribonuclease HII/HIII KEGG: rrs:RoseRS_2783 ribonuclease H |
| [B] Roseiflexus sp. (strain RS-1) | ROSS102693 | RNH2_ROSS1 | Ribonuclease |
| [B] Dehalococcoides ethenogenes (strain 195) | DEHE100678 | RNH2_DEHE1 | identified by similarity to SP:O31744; match to protein family HMM PF01351 ribonuclease HII |
| [B] Dehalococcoides sp. (strain BAV1) | DEHSB00684 | RNH2_DEHSB | Ribonuclease |
| [B] Dehalococcoides sp. (strain CBDB1) | DEHSC00634 | RNH2_DEHSC | ribonuclease HII |
| [B] Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) | HERA200222 | RNH2_HERA2 | Ribonuclease |
| [B] Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) | THERP00998 | B9L043 | Ribonuclease HII |
| [B] Acaryochloris marina (strain MBIC 11017) | ACAM103895 | RNH2_ACAM1 | Ribonuclease HII |
| [B] Cyanothece (strain ATCC 51142) | CYAA503277 | B1WY87 | Ribonuclease HII |
| [B] Cyanothece sp. (strain PCC 7425 / ATCC 29141) | CYAP400938 | B8HLR0 | Ribonuclease |
| [B] Gloeobacter violaceus | GLOVI01501 | Q7NKH1 | ribonuclease H |
| [B] Microcystis aeruginosa (strain NIES-843) | MICAN01406 | RNH2_MICAN | Ribonuclease HII |
| [B] Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) | SYNP202429 | B1XKH5 | Ribonuclease HII |
| [B] Synechococcus sp. (strain CC9311) | SYNS300367 | RNH2_SYNS3 | Ribonuclease HII |
| [B] Synechococcus sp. (strain CC9605) | SYNSC00306 | RNH2_SYNSC | Ribonuclease H |
| [B] Synechococcus sp. (strain JA-2-3B'a(2-13)) | SYNJB01751 | RNH2_SYNJB | ribonuclease HII identified by match to protein family HMM PF01351 |
| [B] Synechococcus sp. (strain JA-3-3Ab) | SYNJA00773 | RNH2_SYNJA | ribonuclease HII identified by similarity to SP:O31744; match to protein family HMM PF01351 |
| [B] Synechococcus sp. (strain PCC 6301) | SYNP600657 | RNH2_SYNP6 | ribonuclease HII |
| [B] Synechococcus sp. (strain RCC307) | SYNR302173 | RNH2_SYNR3 | Ribonuclease |
| [B] Synechococcus sp. (strain WH7803) | SYNPW00372 | RNH2_SYNPW | Ribonuclease HII |
| [B] Synechococcus sp. (strain WH8102) | SYNPX02143 | RNH2_SYNPX | Ribonuclease HII |
| [B] Synechocystis sp. (strain PCC 6803) | SYNY300079 | RNH2_SYNY3 | Ribonuclease HII |
| [B] Thermosynechococcus elongatus (strain BP-1) | THEEB00645 | RNH2_THEEB | Ribonuclease HII |
| [B] Anabaena variabilis (strain ATCC 29413 / PCC 7937) | ANAVT01265 | RNH2_ANAVT | Ribonuclease HII/HIII |
| [B] Anabaena sp. (strain PCC 7120) | ANASP04287 | RNH2_ANASP | Ribonuclease HII |
| [B] Nostoc punctiforme (strain ATCC 29133 / PCC 73102) | NOSP703395 | B2J5B6 | Ribonuclease HII/HIII |
| [B] Trichodesmium erythraeum (strain IMS101) | TRIEI00390 | RNH2_TRIEI | Ribonuclease H |
| [B] Prochlorococcus marinus | PROMA01654 | RNH2_PROMA | Ribonuclease HII |
| [B] Prochlorococcus marinus (strain AS9601) | PROMS01700 | RNH2_PROMS | Ribonuclease HII and HIII COG164 Ribonuclease HII [DNA replication, recombination, and repair] |
| [B] Prochlorococcus marinus (strain MIT 9211) | PROM401625 | A9BCJ4 | Ribonuclease |
| [B] Prochlorococcus marinus (strain MIT 9215) | PROM201765 | RNH2_PROM2 | Ribonuclease HII and HIII |
| [B] Prochlorococcus marinus (strain MIT 9301) | PROM001693 | RNH2_PROM0 | Ribonuclease HII and HIII COG164 Ribonuclease HII [DNA replication, recombination, and repair] |
| [B] Prochlorococcus marinus (strain MIT 9303) | PROM302340 | RNH2_PROM3 | Ribonuclease HII and HIII |
| [B] Prochlorococcus marinus (strain MIT 9312) | PROM901742 | RNH2_PROM9 | Ribonuclease HII |
| [B] Prochlorococcus marinus (strain MIT 9313) | PROMM01779 | RNH2_PROMM | Ribonuclease HII and HIII |
| [B] Prochlorococcus marinus (strain MIT 9515) | PROM501674 | RNH2_PROM5 | Ribonuclease HII and HIII COG164 Ribonuclease HII [DNA replication, recombination, and repair] |
| [B] Prochlorococcus marinus (strain NATL1A) | PROM101916 | RNH2_PROM1 | Ribonuclease HII and HIII |
| [B] Prochlorococcus marinus (strain NATL2A) | PROMT01869 | RNH2_PROMT | Ribonuclease HII |
| [B] Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) | PROMP01736 | RNH2_PROMP | Ribonuclease HII |
| [B] Deinococcus geothermalis (strain DSM 11300) | DEIGD01602 | Q1IXW6 | Ribonuclease H PFAM: ribonuclease HII/HIII: (4.9e-47) KEGG: dra:DR1949 ribonuclease HII, ev=2e-95, 83% identity |
| [B] Deinococcus radiodurans | DEIRA01891 | Q9RT20 | Ribonuclease |
| [B] Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | THET201775 | RNH2_THET2 | Ribonuclease HII |
| [B] Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | THET800198 | RNH2_THET8 | Ribonuclease HII |
| [B] Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) | DICT601353 | B5YFD2 | Ribonuclease HII |
| [B] Dictyoglomus turgidum (strain Z-1310 / DSM 6724) | DICTD01463 | B8E2G1 | Ribonuclease |
| [B] Bacillus amyloliquefaciens (strain FZB42) | BACA201503 | RNH2_BACA2 | RnhB |
| [B] Bacillus anthracis | BACAN03638 | RNH2_BACAN | identified by match to TIGR protein family HMM TIGR00716 ribonuclease HII |
| [B] Bacillus cereus (strain AH187) | BACC703675 | RNH2_BACC7 | Ribonuclease HII |
| [B] Bacillus cereus (strain ATCC 10987) | BACC103839 | RNH2_BACC1 | identified by match to protein family HMM PF01351 ribonuclease HII |
| [B] Bacillus cereus (strain ATCC 14579 / DSM 31) | BACCR03637 | RNH2_BACCR | Ribonuclease HII |
| [B] Bacillus cereus (strain G9842) | BACC203836 | RNH2_BACC2 | Ribonuclease HII |
| [B] Bacillus cereus (strain ZK) | BACCZ03559 | RNH2_BACCZ | ribonuclease HII (RNase HII) |
| [B] Bacillus cereus subsp. cytotoxis (strain NVH 391-98) | BACCN02345 | RNH2_BACCN | Ribonuclease |
| [B] Bacillus clausii (strain KSM-K16) | BACSK02272 | RNH2_BACSK | ribonuclease HII |
| [B] Bacillus halodurans | BACHD02433 | RNH2_BACHD | ribonuclease H |
| [B] Bacillus licheniformis (strain DSM 13 / ATCC 14580) | BACLD01712 | RNH2_BACLD | InterProMatches:IPR001352; Molecular Function: RNA binding (GO:0003723), Molecular Function: ribonuclease H activity (GO:0004523) ribonuclease HII |
| [B] Bacillus pumilus (strain SAFR-032) | BACP201484 | RNH2_BACP2 | Ribonuclease HII |
| [B] Bacillus subtilis | BACSU01605 | RNH2_BACSU | Ribonuclease HII |
| [B] Bacillus thuringiensis (strain Al Hakam) | BACAH03277 | RNH2_BACAH | ribonuclease HII (RNase HII) |
| [B] Bacillus thuringiensis (subsp. konkukian) | BACHK03517 | RNH2_BACHK | ribonuclease HII (RNase HII) |
| [B] Bacillus weihenstephanensis (strain KBAB4) | BACWK03562 | RNH2_BACWK | Ribonuclease H |
| [B] Geobacillus kaustophilus | GEOKA01194 | RNH2_GEOKA | ribonuclease HII |
| [B] Geobacillus thermodenitrificans (strain NG80-2) | GEOTN01035 | RNH2_GEOTN | Ribonuclease HII |
| [B] Lysinibacillus sphaericus (strain C3-41) | LYSSC01488 | B1HQI7 | Ribonuclease |
| [B] Oceanobacillus iheyensis | OCEIH01537 | RNH2_OCEIH | CDS_ID OB1540 ribonuclease H |
| [B] Listeria innocua | LISIN01309 | RNH2_LISIN | similar to ribonuclease H rnh |
| [B] Listeria monocytogenes | LISMO01269 | RNH2_LISMO | similar to ribonuclease H rnh |
| [B] Listeria monocytogenes (serotype 4b / strain F2365) | LISMF01275 | RNH2_LISMF | identified by similarity to SP:O31744; match to protein family HMM PF01351 ribonuclease HII |
| [B] Listeria monocytogenes serotype 4a (strain HCC23) | LISMH01281 | RNH2_LISMH | Ribonuclease |
| [B] Listeria monocytogenes serotype 4b (strain Clip81459) | LISMC01257 | RNH2_LISMC | Putative ribonuclease H rnh |
| [B] Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) | LISW601290 | RNH2_LISW6 | RnhB protein |
| [B] Macrococcus caseolyticus (strain JCSC5402) | MACCJ00832 | RNH2_MACCJ | Ribonuclease |
| [B] Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) | BREBN03549 | C0ZFM7 | Ribonuclease HII |
| [B] Staphylococcus aureus (strain COL) | STAAC01229 | RNH2_STAAC | identified by similarity to EGAD:108435; match to protein family HMM PF01351 ribonuclease HII |
| [B] Staphylococcus aureus (strain JH1) | STAA201292 | RNH2_STAA2 | Ribonuclease H PFAM: ribonuclease HII/HIII KEGG: sav:SAV1244 RNase HII |
| [B] Staphylococcus aureus (strain JH9) | STAA901268 | RNH2_STAA9 | RNase HII PFAM: ribonuclease HII/HIII |
| [B] Staphylococcus aureus (strain MRSA252) | STAAR01182 | RNH2_STAAR | Similar to Bacillus subtilis ribonuclease HII RnhB SW:RNH2_BACSU (O31744) (255 aa) fasta scores: E(): 3.4e-37, 48.031% id in 254 aa, and to Lactococcus lactis putative ribonuclease HII RnhB SW:RNH2_LACLA (Q9CG17) (258 aa) fasta scores: E(): 7e-40, 49.020% id in 255 aa putative ribonuclease HII |
| [B] Staphylococcus aureus (strain MSSA476) | STAAS01183 | RNH2_STAAS | Ortholog of S. aureus MRSA252 (BX571856) SAR1220 putative ribonuclease HII |
| [B] Staphylococcus aureus (strain MW2) | STAAW01127 | RNH2_STAAW | RNase HII |
| [B] Staphylococcus aureus (strain Mu3 / ATCC 700698) | STAA101219 | RNH2_STAA1 | RNase HII |
| [B] Staphylococcus aureus (strain Mu50 / ATCC 700699) | STAAM01238 | RNH2_STAAM | RNase HII |
| [B] Staphylococcus aureus (strain N315) | STAAN01111 | RNH2_STAAN | RNase HII |
| [B] Staphylococcus aureus (strain NCTC 8325) | STAA801144 | RNH2_STAA8 | conserved hypothetical protein |
| [B] Staphylococcus aureus (strain Newman) | STAAE01112 | RNH2_STAAE | Ribonuclease |
| [B] Staphylococcus aureus (strain USA300 / TCH1516) | STAAT01144 | RNH2_STAAT | ribonuclease H |
| [B] Staphylococcus aureus (strain USA300) | STAA301110 | RNH2_STAA3 | ribonuclease HII identified by match to protein family HMM PF01351 |
| [B] Staphylococcus aureus (strain bovine RF122) | STAAB01102 | RNH2_STAAB | ribonuclease HII |
| [B] Staphylococcus epidermidis (strain ATCC 12228) | STAES00903 | RNH2_STAES | Ribonuclease HII |
| [B] Staphylococcus epidermidis (strain ATCC 35984 / RP62A) | STAEQ00786 | RNH2_STAEQ | identified by similarity to EGAD:108435; match to protein family HMM PF01351 ribonuclease HII |
| [B] Staphylococcus haemolyticus (strain JCSC1435) | STAHJ01623 | RNH2_STAHJ | ribonuclease HII |
| [B] Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) | STAS101520 | RNH2_STAS1 | similar to gi|27467840|ref|NP_764477.1| [Staphylococcus epidermidis ATCC 12228], percent identity 63 in 255 aa, BLASTP E(): 2e-89 ribonuclease HII |
| [B] Anaerocellum thermophilum (strain DSM 6725 / Z-1320) | ANATD00899 | RNH2_ANATD | Ribonuclease H |
| [B] Alkaliphilus metalliredigens (strain QYMF) | ALKMQ02508 | RNH2_ALKMQ | Ribonuclease |
| [B] Clostridium acetobutylicum | CLOAB01739 | RNH2_CLOAB | Ribonuclease HII |
| [B] Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) | CLOB801168 | RNH2_CLOB8 | Ribonuclease |
| [B] Clostridium botulinum (strain ATCC 19397 / Type A) | CLOB102206 | RNH2_CLOB1 | Ribonuclease |
| [B] Clostridium botulinum (strain Eklund 17B / type B) | CLOBB01184 | B2TJ34 | Ribonuclease HII |
| [B] Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) | CLOBH02436 | RNH2_CLOBH | Ribonuclease |
| [B] Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) | CLOBL02370 | RNH2_CLOBL | Ribonuclease |
| [B] Clostridium botulinum (strain Loch Maree / Type A3) | CLOBM02418 | RNH2_CLOBM | Ribonuclease HII |
| [B] Clostridium botulinum (strain Okra / Type B1) | CLOBK02358 | RNH2_CLOBK | Ribonuclease HII |
| [B] Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) | CLOCE00698 | RNH2_CLOCE | ribonuclease HII/HIII PFAM: ribonuclease HII/HIII; KEGG: cth:Cthe_0761 RNase HII |
| [B] Clostridium difficile (strain 630) | CLOD601264 | RNH2_CLOD6 | ribonuclease HII |
| [B] Clostridium novyi (strain NT) | CLONN01294 | RNH2_CLONN | ribonuclease H identified by match to protein family HMM PF01351 |
| [B] Clostridium perfringens | CLOPE01706 | RNH2_CLOPE | Ribonuclease HII |
| [B] Clostridium perfringens (strain ATCC 13124 / NCTC 8237) | CLOP101916 | RNH2_CLOP1 | ribonuclease HII identified by similarity to SP:O31744; match to protein family HMM PF01351 |
| [B] Clostridium perfringens (strain SM101) | CLOPS01631 | RNH2_CLOPS | ribonuclease HII identified by similarity to SP:O31744; match to protein family HMM PF01351 |
| [B] Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) | CLOPH02361 | RNH2_CLOPH | Ribonuclease H |
| [B] Clostridium tetani | CLOTE01088 | RNH2_CLOTE | ribonuclease HII |
| [B] Clostridium thermocellum (strain ATCC 27405 / DSM 1237) | CLOTH00731 | RNH2_CLOTH | Ribonuclease H |
| [B] Finegoldia magna (strain ATCC 29328) | FINM200532 | B0S050 | Ribonuclease |
| [B] Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) | HELMI02059 | B0TH73 | Ribonuclease |
| [B] Desulforudis audaxviator (strain MP104C) | DESAP00616 | B1I2N5 | Ribonuclease |
| [B] Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) | CARHZ01373 | RNH2_CARHZ | identified by similarity to SP:O31744; match to protein family HMM PF01351 ribonuclease HII |
| [B] Desulfitobacterium hafniense (strain Y51) | DESHY02556 | RNH2_DESHY | hypothetical protein similarity to COG0164 Ribonuclease HII(Evalue: 1E-60) |
| [B] Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) | PELTS01689 | RNH2_PELTS | Ribonuclease |
| [B] Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) | CALS802020 | RNH2_CALS8 | Ribonuclease |
| [B] Syntrophomonas wolfei subsp. wolfei (strain Goettingen) | SYNWW01403 | RNH2_SYNWW | Ribonuclease H |
| [B] Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) | NATTJ01332 | RNH2_NATTJ | RNase HII |
| [B] Moorella thermoacetica (strain ATCC 39073) | MOOTA00936 | RNH2_MOOTA | Ribonuclease H |
| [B] Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) | THEP301208 | B0K9V7 | Ribonuclease |
| [B] Thermoanaerobacter sp. (strain X514) | THEPX01640 | B0K1U0 | Ribonuclease |
| [B] Thermoanaerobacter tengcongensis | THETN01323 | RNH2_THETN | Best Blastp hit = gi|13622298|gb|AAK34033.1| (AE006557) putative ribonuclease HII [Streptococcus pyogenes], score 200, E-value 2.00E-50 Ribonuclease HII |
| [B] Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) | COPPD00682 | B5Y8F7 | Ribonuclease HII |
| [B] Enterococcus faecalis | ENTFA01536 | RNH2_ENTFA | Ribonuclease HII |
| [B] Lactobacillus acidophilus | LACAC00921 | RNH2_LACAC | COG0164 Ribonuclease HII Ribonuclease HII |
| [B] Lactobacillus brevis (strain ATCC 367 / JCM 1170) | LACBA00753 | RNH2_LACBA | Ribonuclease HII |
| [B] Lactobacillus casei (strain ATCC 334) | LACC301264 | RNH2_LACC3 | Ribonuclease HII |
| [B] Lactobacillus casei (strain BL23) | LACCB01537 | RNH2_LACCB | Ribonuclease HII |
| [B] Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) | LACDA01175 | RNH2_LACDA | Ribonuclease HII |
| [B] Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) | LACDB00985 | RNH2_LACDB | Ribonuclease HII |
| [B] Lactobacillus fermentum (strain IFO 3956 / LMG 18251) | LACF300883 | RNH2_LACF3 | Ribonuclease HII |
| [B] Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) | LACGA00826 | RNH2_LACGA | Ribonuclease HII |
| [B] Lactobacillus helveticus (strain DPC 4571) | LACH400822 | RNH2_LACH4 | Ribonuclease HII |
| [B] Lactobacillus johnsonii | LACJO00944 | RNH2_LACJO | ribonuclease HII |
| [B] Lactobacillus plantarum | LACPL01545 | RNH2_LACPL | ribonuclease HII |
| [B] Lactobacillus reuteri (strain DSM 20016) | LACRD00751 | RNH2_LACRD | Ribonuclease HII |
| [B] Lactobacillus reuteri (strain JCM 1112) | LACRJ00733 | RNH2_LACRJ | ribonuclease HII |
| [B] Lactobacillus sakei subsp. sakei (strain 23K) | LACSS00980 | RNH2_LACSS | Ribonuclease HII (RNase HII) |
| [B] Lactobacillus salivarius subsp. salivarius (strain UCC118) | LACS100699 | RNH2_LACS1 | Ribonuclease HII COG0164 [L] Ribonuclease HII |
| [B] Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) | PEDPA00916 | RNH2_PEDPA | Ribonuclease HII |
| [B] Leuconostoc citreum (strain KM20) | LEUCK00934 | RNH2_LEUCK | Ribonuclease HII |
| [B] Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) | LEUMM00702 | RNH2_LEUMM | Ribonuclease HII |
| [B] Lactococcus lactis subsp. cremoris (strain MG1363) | LACLM01124 | RNH2_LACLM | RnhB protein |
| [B] Lactococcus lactis subsp. cremoris (strain SK11) | LACLS01243 | RNH2_LACLS | Ribonuclease HII |
| [B] Lactococcus lactis subsp. lactis | LACLA01264 | RNH2_LACLA | Ribonuclease HII |
| [B] Streptococcus agalactiae (serotype III) | STRA300949 | RNH2_STRA3 | similar to ribonuclease HII Unknown |
| [B] Streptococcus agalactiae (serotype V) | STRA500980 | RNH2_STRA5 | identified by match to PFAM protein family HMM PF01351 ribonuclease HII |
| [B] Streptococcus agalactiae serotype Ia | STRA100990 | RNH2_STRA1 | identified by similarity to SP:O31744; match to protein family HMM PF01351 ribonuclease HII |
| [B] Streptococcus equi subsp. equi (strain 4047) | STRE401099 | C0M6D2 | ribonuclease HII |
| [B] Streptococcus equi subsp. zooepidemicus (strain H70) | STRS700982 | C0MFR7 | ribonuclease HII Ortholog of S. equi 4047 (FM204883) SEQ1221 |
| [B] Streptococcus equi subsp. zooepidemicus (strain MGCS10565) | STREM00931 | RNH2_STREM | Ribonuclease HII RnhB |
| [B] Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) | STRGC01166 | RNH2_STRGC | Ribonuclease |
| [B] Streptococcus mutans | STRMU00896 | RNH2_STRMU | Best Blastp Hit: sp|O31744|RNH2_BACSU RIBONUCLEASE HII (RNASE HII) >gi|7435239|pir||C69693 ribonuclease H rnh - Bacillus subtilis >gi|2633978|emb|CAB13479.1| (Z99112) ribonuclease H [Bacillus subtilis] putative ribonuclease HII |
| [B] Streptococcus pneumoniae | STRPN01064 | RNH2_STRPN | ribonuclease HII |
| [B] Streptococcus pneumoniae (strain ATCC BAA-255 / R6) | STRR601038 | RNH2_STRR6 | Ribonuclease H |
| [B] Streptococcus pneumoniae (strain CGSP14) | STRPS01125 | RNH2_STRPS | Ribonuclease HII |
| [B] Streptococcus pneumoniae (strain Hungary19A-6) | STRPI01158 | RNH2_STRPI | Ribonuclease |
| [B] Streptococcus pneumoniae (strain JJA) | STRZJ01016 | RNH2_STRZJ | Ribonuclease HII |
| [B] Streptococcus pneumoniae (strain P1031) | STRZP01094 | RNH2_STRZP | Ribonuclease HII |
| [B] Streptococcus pneumoniae serotype 19F (strain G54) | STRP401037 | RNH2_STRP4 | Ribonuclease HII |
| [B] Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) | STRP200958 | RNH2_STRP2 | ribonuclease HII equivalent gene in S.pneumoniae TIGR4 = SP1156; equivalent gene in S.pneumoniae R6 = spr1044; identified by match to protein family HMM PF01351 |
| [B] Streptococcus pyogenes (serotype M18) | STRP800905 | RNH2_STRP8 | best blastp match gb|AAK34033.1| (AE006557) putative ribonuclease HII [Streptococcus pyogenes M1 GAS] putative ribonuclease HII |
| [B] Streptococcus pyogenes (serotype M3) | STRP300817 | RNH2_STRP3 | best blastp hit: gb|AAL97743.1| (AE010038) putative ribonuclease HII [Streptococcus pyogenes MGAS8232] putative ribonuclease HII |
| [B] Streptococcus pyogenes (serotype M6) | STRP600874 | RNH2_STRP6 | Ribonuclease HII |
| [B] Streptococcus pyogenes serotype M1 | STRP101423 | RNH2_STRP1 | Ribonuclease HII |
| [B] Streptococcus pyogenes serotype M12 (strain MGAS2096) | STRPB00944 | RNH2_STRPB | Ribonuclease HII |
| [B] Streptococcus pyogenes serotype M12 (strain MGAS9429) | STRPC00990 | RNH2_STRPC | ribonuclease HII |
| [B] Streptococcus pyogenes serotype M2 (strain MGAS10270) | STRPD00974 | RNH2_STRPD | Ribonuclease HII |
| [B] Streptococcus pyogenes serotype M28 | STRPM00850 | RNH2_STRPM | ribonuclease HII |
| [B] Streptococcus pyogenes serotype M4 (strain MGAS10750) | STRPF01019 | RNH2_STRPF | Ribonuclease HII |
| [B] Streptococcus pyogenes serotype M49 (strain NZ131) | STRPZ00858 | RNH2_STRPZ | Ribonuclease HII |
| [B] Streptococcus pyogenes serotype M5 (strain Manfredo) | STRPG00881 | RNH2_STRPG | Ribonuclease HII |
| [B] Streptococcus sanguinis (strain SK36) | STRSV01121 | RNH2_STRSV | Ribonuclease HII, putative |
| [B] Streptococcus suis (strain 05ZYH33) | STRSY00985 | RNH2_STRSY | Ribonuclease HII |
| [B] Streptococcus suis (strain 98HAH33) | STRS200998 | RNH2_STRS2 | Ribonuclease HII |
| [B] Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) | STRT200825 | RNH2_STRT2 | ribonuclease HII |
| [B] Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) | STRTD00741 | RNH2_STRTD | Ribonuclease HII |
| [B] Streptococcus thermophilus (strain CNRZ 1066) | STRT100858 | RNH2_STRT1 | ribonuclease HII |
| [B] Caulobacter crescentus | CAUCR00377 | RNH2_CAUCR | Ribonuclease HII |
| [B] Caulobacter sp. (strain K31) | CAUSK04283 | RNH2_CAUSK | Ribonuclease H |
| [B] Phenylobacterium zucineum (strain HLK1) | PHEZH00576 | B4RF02 | Ribonuclease HII |
| [B] Bartonella bacilliformis (strain ATCC 35685 / KC583) | BARBK00366 | RNH2_BARBK | Ribonuclease HII |
| [B] Bartonella henselae | BARHE00411 | RNH2_BARHE | Ribonuclease HII |
| [B] Bartonella tribocorum (strain CIP 105476 / IBS 506) | BART100521 | RNH2_BART1 | homologous to Ribonuclease HII of Brucella melitensis (EC 3.1.26.4) (P0A4D9) (RNase HII)(P0A4D9),InterPro; Ribonuclease HII/HIII hypothetical protein |
| [B] Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) | BEII900908 | B2IHP9 | Ribonuclease H |
| [B] Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) | METSB01558 | B8EI63 | Ribonuclease |
| [B] Bradyrhizobium japonicum | BRAJA02473 | RNH2_BRAJA | Ribonuclease HII |
| [B] Nitrobacter hamburgensis (strain X14 / DSM 10229) | NITHX03007 | RNH2_NITHX | Ribonuclease H |
| [B] Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) | NITWN02451 | RNH2_NITWN | ribonuclease HII/HIII |
| [B] Rhodopseudomonas palustris (strain BisB18) | RHOPB04282 | RNH2_RHOPB | Ribonuclease H |
| [B] Brucella abortus | BRUAB00384 | RNH2_BRUAB | similar to BR0386, ribonuclease HII RnhB, ribonuclease HII |
| [B] Brucella abortus (strain 2308) | BRUA200411 | RNH2_BRUA2 | Ribonuclease HII/HIII |
| [B] Brucella abortus (strain S19) | BRUA100358 | B2S9N2 | Ribonuclease HII/HIII |
| [B] Brucella canis (strain ATCC 23365 / NCTC 10854) | BRUC200368 | RNH2_BRUC2 | Ribonuclease |
| [B] Brucella melitensis | BRUME01530 | RNH2_BRUME | Ribonuclease HII |
| [B] Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) | BRUO200354 | RNH2_BRUO2 | Ribonuclease HII |
| [B] Brucella suis | BRUSU00374 | RNH2_BRUSU | similar to SP:O68821, GB:X65561, and PID:296267; identified by sequence similarity; putative ribonuclease HII |
| [B] Brucella suis (strain ATCC 23445 / NCTC 10510) | BRUSI00387 | RNH2_BRUSI | Ribonuclease HII GO_function: ribonuclease H activity [GO ID 0004523] |
| [B] Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) | OCHA400505 | RNH2_OCHA4 | Ribonuclease |
| [B] Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) | METC401993 | B7KXA1 | Ribonuclease H PFAM: ribonuclease HII/HIII; KEGG: mex:Mext_1792 ribonuclease H |
| [B] Methylobacterium extorquens (strain PA1) | METEP01756 | A9W3N5 | Ribonuclease H |
| [B] Methylobacterium nodulans (strain ORS2060 / LMG 21967) | METNO05729 | B8IU46 | Ribonuclease |
| [B] Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) | METPB01700 | B1ZHH1 | Ribonuclease H |
| [B] Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) | METRJ03607 | B1LVZ9 | Ribonuclease |
| [B] Methylobacterium sp. (strain 4-46) | METS405052 | B0UR08 | Ribonuclease |
| [B] Mesorhizobium sp. (strain BNC1) | MESSB00698 | ABG62103.1 | ribonuclease HII/HIII PFAM: ribonuclease HII/HIII KEGG: mlo:mll7416 ribonuclease HII |
| [B] Rhizobium loti | RHILO05816 | RNH2_RHILO | ribonuclease HII |
| [B] Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) | PARL100703 | RNH2_PARL1 | Ribonuclease |
| [B] Agrobacterium radiobacter (strain K84 / ATCC BAA-868) | AGRRK00848 | B9JA33 | Ribonuclease |
| [B] Agrobacterium tumefaciens (strain C58 / ATCC 33970) | AGRT500703 | RNH2_AGRT5 | Ribonuclease HII |
| [B] Rhizobium etli (strain CFN 42 / ATCC 51251) | RHIEC00838 | RNH2_RHIEC | ribonuclease HII protein similar to rnhB (SMc00867) [Sinorhizobium meliloti] Similar to swissprot:Q92RM4 Putative location:bacterial cytoplasm Psort-Score: 0.0245; go_function: hydrolase activity [goid 0016787]; go_function: endonuclease activity [goid 0004519]; go_function: RNA binding [goid 0003723]; go_function: nuclease activity [goid 0004518]; go_function: manganese ion binding [goid 0030145]; go_function: ribonuclease H activity [goid 0004523]; go_process: RNA catabolism [goid 0006401] |
| [B] Rhizobium etli (strain CIAT 652) | RHIE600941 | RNH2_RHIE6 | Ribonuclease HII protein |
| [B] Rhizobium leguminosarum bv. trifolii (strain WSM2304) | RHILW00509 | RNH2_RHILW | Ribonuclease HII |
| [B] Rhizobium leguminosarum bv. viciae (strain 3841) | RHIL300937 | RNH2_RHIL3 | putative ribonuclease HII similarity:fasta; with=UniProt:RNH2_ECOLI (EMBL:ECTSF); Escherichia coli.; rnhB; OrderedLocusNames=b0183;; Ribonuclease HII (EC 3.1.26.4) (RNase HII). Ribonuclease HII (EC 3.1.26.4) (RNase HII).; length=198; id 51.648; 182 aa overlap; query 36-216; subject 12-192 similarity:fasta; with=UniProt:RNH2_RHIME (EMBL:SME591785); Rhizobium meliloti (Sinorhizobium meliloti).; rnhB; Ribonuclease HII (EC 3.1.26.4) (RNase HII).; length=216; id 71.759; 216 aa overlap; query 1-216; subject 1-215 |
| [B] Rhizobium meliloti | RHIME00828 | RNH2_RHIME | Product confidence : probable Gene name confidence : probable predicted by Codon_usage predicted by Homology predicted by FrameD PROBABLE RIBONUCLEASE HII PROTEIN |
| [B] Sinorhizobium medicae (strain WSM419) | SINMW00446 | RNH2_SINMW | Ribonuclease HII |
| [B] Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) | AZOC502390 | RNH2_AZOC5 | Ribonuclease H |
| [B] Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) | XANP201212 | RNH2_XANP2 | Ribonuclease |
| [B] Maricaulis maris (strain MCS10) | MARMM02186 | RNH2_MARMM | Ribonuclease H |
| [B] Dinoroseobacter shibae (strain DFL 12) | DINSH00023 | RNH2_DINSH | Ribonuclease |
| [B] Jannaschia sp. (strain CCS1) | JANSC00390 | RNH2_JANSC | Ribonuclease H |
| [B] Paracoccus denitrificans (strain Pd 1222) | PARDP02025 | RNH2_PARDP | Ribonuclease H PFAM: ribonuclease HII/HIII KEGG: sit:TM1040_2650 ribonuclease H |
| [B] Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) | RHOS400043 | RNH2_RHOS4 | pfam01351, RNase_HII, Ribonuclease HII ribonuclease HII |
| [B] Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) | RHOS500066 | RNH2_RHOS5 | Ribonuclease |
| [B] Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) | RHOS100120 | RNH2_RHOS1 | Ribonuclease H PFAM: ribonuclease HII/HIII KEGG: rsp:RSP_1470 ribonuclease HII |
| [B] Rhodobacter sphaeroides (strain KD131 / KCTC 12085) | RHOSK02838 | RNH2_RHOSK | Ribonuclease |
| [B] Roseobacter denitrificans (strain ATCC 33942 / OCh 114) | ROSDO00282 | RNH2_ROSDO | ribonuclease HII |
| [B] Silicibacter pomeroyi | SILPO03362 | RNH2_SILPO | identified by similarity to SP:P10442; match to protein family HMM PF01351 ribonuclease HII |
| [B] Silicibacter sp. (strain TM1040) | SILST02640 | RNH2_SILST | Ribonuclease H PFAM: ribonuclease HII/HIII: (7e-79) KEGG: sil:SPO3452 ribonuclease HII, ev=5e-80, 71% identity |
| [B] Acidiphilium cryptum (strain JF-5) | ACICJ00624 | RNH2_ACICJ | Ribonuclease |
| [B] Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) | GLUDA03282 | RNH2_GLUDA | Ribonuclease HII |
| [B] Gluconobacter oxydans | GLUOX00328 | RNH2_GLUOX | Ribonuclease HII |
| [B] Granulobacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) | GRABC01856 | RNH2_GRABC | Ribonuclease HII |
| [B] Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) | MAGMM03935 | BAE52793.1 | Ribonuclease HII |
| [B] Rhodospirillum centenum (strain ATCC 51521 / SW) | RHOCS03088 | B6IW64 | RibonucleasehII |
| [B] Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) | RHORT03196 | RNH2_RHORT | Ribonuclease H |
| [B] Anaplasma phagocytophilum (strain HZ) | ANAPZ00920 | RNH2_ANAPZ | ribonuclease HII identified by similarity to SP:O31744; match to protein family HMM PF01351 |
| [B] Ehrlichia canis (strain Jake) | EHRCJ00172 | RNH2_EHRCJ | Ribonuclease H |
| [B] Ehrlichia chaffeensis (strain Arkansas) | EHRCR00892 | RNH2_EHRCR | ribonuclease HII identified by similarity to SP:P10442; match to protein family HMM PF01351 |
| [B] Ehrlichia ruminantium (strain Gardel) | EHRRG00169 | RNH2_EHRRG | Similar to sp|P40675|RNH2_SALTY sp|P10442|RNH2_ECOLI sp|Q50412|RNH2_MAGSA sp|Q8X8X6|RNH2_ECO57; Ortholog to ERWE_CDS_01750 Ribonuclease HII |
| [B] Ehrlichia ruminantium (strain Welgevonden) | EHRRW00175 | Q5FCZ2 | Similar to sp|P40675|RNH2_SALTY sp|P10442|RNH2_ECOLI sp|Q50412|RNH2_MAGSA sp|Q8X8X6|RNH2_ECO57; Ortholog to ERGA_CDS_01700 Ribonuclease HII |
| [B] Neorickettsia sennetsu (strain Miyayama) | NEOSM00673 | RNH2_NEOSM | ribonuclease HII identified by similarity to SP:P10442; match to protein family HMM PF01351 |
| [B] Orientia tsutsugamushi (strain Boryong) | ORITB00720 | RNH2_ORITB | Ribonuclease |
| [B] Orientia tsutsugamushi (strain Ikeda) | ORITI01312 | RNH2_ORITI | Ribonuclease HII |
| [B] Rickettsia akari (strain Hartford) | RICAH00278 | RNH2_RICAH | Ribonuclease HII |
| [B] Rickettsia bellii (strain OSU 85-389) | RICB800530 | RNH2_RICB8 | Ribonuclease HII |
| [B] Rickettsia bellii (strain RML369-C) | RICBR00498 | RNH2_RICBR | Ribonuclease HII |
| [B] Rickettsia canadensis (strain McKiel) | RICCK00205 | RNH2_RICCK | Ribonuclease HII |
| [B] Rickettsia felis | RICFE01024 | RNH2_RICFE | Ribonuclease HII |
| [B] Rickettsia massiliae (strain Mtu5) | RICM500195 | RNH2_RICM5 | Ribonuclease HII |
| [B] Rickettsia prowazekii | RICPR00194 | RNH2_RICPR | RIBONUCLEASE HII (rnhB) |
| [B] Rickettsia rickettsii (strain Iowa) | RICRO00293 | RNH2_RICRO | ribonuclease HII |
| [B] Rickettsia rickettsii (strain Sheila Smith) | RICRS00280 | RNH2_RICRS | Ribonuclease HII |
| [B] Rickettsia typhi | RICTY00186 | RNH2_RICTY | ribonuclease HII |
| [B] Rickettsia conorii | RICCN00264 | RNH2_RICCN | Ribonuclease HII |
| [B] Wolbachia pipientis subsp. Culex pipiens (strain wPip) | WOLPP00754 | RNH2_WOLPP | Ribonuclease HII |
| [B] Wolbachia pipientis wMel | WOLPM00958 | RNH2_WOLPM | Identified by similarity to GP:4902924; match to PF01351 protein family HMM PF01351 ribonuclease HII |
| [B] Wolbachia sp. (subsp. Brugia malayi) (strain TRS) | WOLTR00638 | RNH2_WOLTR | Ribonuclease HII |
| [B] Wolbachia sp. subsp. Drosophila simulans (strain wRi) | WOLWR00968 | RNH2_WOLWR | Ribonuclease HII |
| [B] Pelagibacter ubique | PELUB00107 | RNH2_PELUB | Ribonuclease HII (RNase HII) |
| [B] Erythrobacter litoralis (strain HTCC2594) | ERYLH00450 | RNH2_ERYLH | ribonuclease HII COG0164 Ribonuclease HII |
| [B] Novosphingobium aromaticivorans (strain DSM 12444) | NOVAD01822 | RNH2_NOVAD | Ribonuclease HII |
| [B] Zymomonas mobilis | ZYMMO00998 | RNH2_ZYMMO | COG0164 ribonuclease HII |
| [B] Bordetella avium (strain 197N) | BORA101731 | RNH2_BORA1 | ribonuclease HII |
| [B] Bordetella bronchiseptica | BORBR02604 | RNH2_BORBR | ortholog of Bordetella pertussis (BX470248) BP1433 ribonuclease HII |
| [B] Bordetella parapertussis | BORPA01531 | RNH2_BORPA | ortholog of Bordetella pertussis (BX470248) BP1433 ribonuclease HII |
| [B] Bordetella pertussis | BORPE01305 | RNH2_BORPE | Similar to Escherichia coli ribonuclease HII RnhB or B0183 SW:RNH2_ECOLI (P10442) (198 aa) fasta scores: E(): 2.2e-37, 58.91% id in 185 aa, and to Pseudomonas aeruginosa ribonuclease HII RnhB or Pa3642 TR:Q9HXY9 (EMBL:AE004784) (201 aa) fasta scores: E(): 3.5e-37, 59.66% id in 181 aa ribonuclease HII |
| [B] Burkholderia ambifaria (strain MC40-6) | BURA401881 | RNH2_BURA4 | Ribonuclease H |
| [B] Burkholderia cenocepacia (strain AU 1054) | BURCA05994 | RNH2_BURCA | Ribonuclease |
| [B] Burkholderia cenocepacia (strain HI2424) | BURCH01992 | RNH2_BURCH | Ribonuclease H PFAM: ribonuclease HII/HIII KEGG: bcn:Bcen_6072 ribonuclease H |
| [B] Burkholderia cenocepacia (strain MC0-3) | BURCC01999 | RNH2_BURCC | Ribonuclease |
| [B] Burkholderia cepacia (strain ATCC 53795 / AMMD) | BURCM02027 | RNH2_BURCM | Ribonuclease H PFAM: ribonuclease HII/HIII KEGG: bur:Bcep18194_A5315 ribonuclease H |
| [B] Burkholderia cepacia (strain J2315 / LMG 16656) | BURCJ01978 | RNH2_BURCJ | ribonuclease HII |
| [B] Burkholderia multivorans (strain ATCC 17616 / 249) | BURM102187 | A9AIM8 | Ribonuclease |
| [B] Burkholderia sp. (strain 383) | BURS302122 | RNH2_BURS3 | Ribonuclease H |
| [B] Burkholderia vietnamiensis (strain G4 / LMG 22486) | BURVG01839 | RNH2_BURVG | Ribonuclease |
| [B] Burkholderia mallei | BURMA01246 | RNH2_BURMA | Ribonuclease HII |
| [B] Burkholderia mallei (strain NCTC 10229) | BURM903074 | RNH2_BURM9 | Ribonuclease |
| [B] Burkholderia mallei (strain NCTC 10247) | BURM701228 | RNH2_BURM7 | Ribonuclease |
| [B] Burkholderia mallei (strain SAVP1) | BURMS01916 | RNH2_BURMS | Ribonuclease |
| [B] Burkholderia phymatum (strain DSM 17167 / STM815) | BURP801308 | B2JIB2 | Ribonuclease H |
| [B] Burkholderia phytofirmans (strain DSM 17436 / PsJN) | BURPP02363 | RNH2_BURPP | Ribonuclease H |
| [B] Burkholderia pseudomallei | BURPS02151 | RNH2_BURPS | Similar to Escherichia coli ribonuclease HII RnhB or b0183 SWALL:RNH2_ECOLI (SWALL:P10442) (198 aa) fasta scores: E(): 3.6e-38, 58.97% id in 195 aa, and to Ralstonia solanacearum probable ribonuclease HII protein rsc1418 or rs05274 SWALL:Q8XZH7 (EMBL:AL646064) (236 aa) fasta scores: E(): 1e-48, 72.34% id in 188 aa ribonuclease HII |
| [B] Burkholderia pseudomallei (strain 1106a) | BURP002441 | RNH2_BURP0 | Ribonuclease HII |
| [B] Burkholderia pseudomallei (strain 1710b) | BURP102520 | RNH2_BURP1 | ribonuclease HII identified by match to protein family HMM PF01351 |
| [B] Burkholderia pseudomallei (strain 668) | BURP602396 | RNH2_BURP6 | Ribonuclease HII |
| [B] Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) | BURTA01973 | RNH2_BURTA | ribonuclease HII identified by match to protein family HMM PF01351 |
| [B] Burkholderia xenovorans (strain LB400) | BURXL02643 | RNH2_BURXL | Ribonuclease |
| [B] Ralstonia eutropha (strain JMP134) | RALEJ01842 | RNH2_RALEJ | Ribonuclease H |
| [B] Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) | RALME01432 | RNH2_RALME | ribonuclease HII/HIII |
| [B] Polynucleobacter necessarius (strain STIR1) | POLNS00452 | RNH2_POLNS | Ribonuclease H |
| [B] Polynucleobacter sp. (strain QLW-P1DMWA-1) | POLSQ01426 | RNH2_POLSQ | Ribonuclease |
| [B] Delftia acidovorans (strain DSM 14801 / SPH-1) | DELAS04842 | RNH2_DELAS | Ribonuclease |
| [B] Methylibium petroleiphilum (strain PM1) | METPP03918 | RNH21_METPP | Ribonuclease H |
| [B] Thiobacillus denitrificans (strain ATCC 25259) | THIDA00798 | RNH2_THIDA | ribonuclease H |
| [B] Methylobacillus flagellatus (strain KT / ATTC 51484 / DSM 6875) | METFK01369 | RNH2_METFK | Ribonuclease H |
| [B] Chromobacterium violaceum | CHRVO02205 | RNH2_CHRVO | identified by sequence similarity; putative; ORF located using Blastx/COG0164 ribonuclease HII |
| [B] Laribacter hongkongensis (strain HLHK9) | LARHH00697 | RNH2_LARHH | Rnh2 |
| [B] Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) | NEIG101581 | RNH2_NEIG1 | Best Blastp Hit: pir||B81999 ribonuclease H (EC 3.1.26.4) II NMA0075 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7378848|emb|CAB83391.1| (AL162752) ribonuclease HII [Neisseria meningitidis] COG0164 Ribonuclease HII; RnhB putative ribonuclease HII |
| [B] Neisseria gonorrhoeae (strain NCCP11945) | NEIG202403 | B4RR27 | RnhB |
| [B] Neisseria meningitidis serogroup A | NEIMA00065 | RNH2_NEIMA | Ribonuclease HII |
| [B] Neisseria meningitidis serogroup B | NEIMB00180 | RNH2_NEIMB | Ribonuclease HII |
| [B] Neisseria meningitidis serogroup C (strain 053442) | NEIM001839 | RNH2_NEIM0 | ribonuclease HII Code: L; COG: COG0164 |
| [B] Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) | NEIMF00165 | RNH2_NEIMF | Ribonuclease HII |
| [B] Nitrosomonas europaea | NITEU01658 | RNH2_NITEU | Ribonuclease HII and HIII |
| [B] Nitrosomonas eutropha (strain C71) | NITEC01897 | RNH2_NITEC | Ribonuclease H PFAM: ribonuclease HII/HIII KEGG: neu:NE1707 ribonuclease HII and HIII |
| [B] Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) | NITMU00647 | RNH2_NITMU | Ribonuclease H |
| [B] Azoarcus sp. (strain EbN1) | AZOSE03330 | RNH2_AZOSE | Ribonuclease HII |
| [B] Dechloromonas aromatica (strain RCB) | DECAR01725 | RNH2_DECAR | Ribonuclease HII/HIII |
| [B] Bdellovibrio bacteriovorus | BDEBA01935 | RNH2_BDEBA | InterPro: Ribonuclease HII and HIII hypothetical protein ribonuclease HII (RNase HII) |
| [B] Desulfatibacillum alkenivorans (strain AK-01) | DESAA04553 | B8FNP0 | Ribonuclease |
| [B] Desulfococcus oleovorans (strain DSM 6200 / Hxd3) | DESOH02289 | A8ZV17 | Ribonuclease |
| [B] Desulfotalea psychrophila | DESPS02805 | RNH2_DESPS | probable ribonuclease HII |
| [B] Desulfovibrio desulfuricans (strain G20) | DESDG01076 | RNH2_DESDG | Ribonuclease H |
| [B] Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) | DESVH00828 | RNH2_DESVH | identified by match to protein family HMM PF01351 ribonuclease HII |
| [B] Desulfovibrio vulgaris subsp. vulgaris (strain DP4) | DESVV02133 | RNH2_DESVV | Ribonuclease H |
| [B] Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) | GEOBB03376 | RNH2_GEOBB | Ribonuclease HII/HIII |
| [B] Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) | GEOLS02396 | B3E5S9 | Ribonuclease H |
| [B] Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) | GEOMG02771 | RNH2_GEOMG | Ribonuclease HII/HIII |
| [B] Geobacter sulfurreducens | GEOSL00638 | RNH2_GEOSL | Ribonuclease HII |
| [B] Geobacter uraniumreducens (strain Rf4) | GEOUR03598 | RNH2_GEOUR | Ribonuclease |
| [B] Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) | PELCD02357 | RNH2_PELCD | Ribonuclease HII |
| [B] Pelobacter propionicus (strain DSM 2379) | PELPD01034 | RNH2_PELPD | Ribonuclease H PFAM: ribonuclease HII/HIII KEGG: gsu:GSU0649 ribonuclease HII |
| [B] Syntrophus aciditrophicus (strain SB) | SYNAS02294 | RNH2_SYNAS | ribonuclease HII |
| [B] Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) | SYNFM02962 | RNH2_SYNFM | ribonuclease HII/HIII PFAM: ribonuclease HII/HIII KEGG: gme:Gmet_2865 ribonuclease HII/HIII |
| [B] Arcobacter butzleri (strain RM4018) | ARCB401586 | RNH2_ARCB4 | Ribonuclease HII |
| [B] Campylobacter concisus (strain 13826) | CAMC101869 | RNH2_CAMC1 | Ribonuclease |
| [B] Campylobacter curvus (strain 525.92) | CAMC501856 | RNH2_CAMC5 | Ribonuclease |
| [B] Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) | CAMHC00404 | RNH2_CAMHC | Ribonuclease |
| [B] Campylobacter jejuni | CAMJE00010 | RNH2_CAMJE | Ribonuclease HII |
| [B] Campylobacter jejuni (strain RM1221) | CAMJR00009 | RNH2_CAMJR | identified by match to protein family HMM PF01351 ribonuclease HII |
| [B] Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) | CAMJD00010 | RNH2_CAMJD | Ribonuclease HII |
| [B] Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) | CAMJJ00010 | RNH2_CAMJJ | ribonuclease HII identified by match to protein family HMM PF01351 |
| [B] Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) | CAMJ800009 | RNH2_CAMJ8 | Ribonuclease |
| [B] Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) | CAMLR00081 | B9KEG4 | Ribonuclease |
| [B] Helicobacter pylori (strain G27) | HELPG01240 | RNH2_HELPG | Ribonuclease HII |
| [B] Helicobacter pylori (strain HPAG1) | HELPH01266 | RNH2_HELPH | ribonuclease HII |
| [B] Helicobacter pylori (strain Shi470) | HELPS01294 | RNH2_HELPS | Ribonuclease HII |
| [B] Helicobacter pylori J99 | HELPJ01239 | RNH2_HELPJ | Ribonuclease HII |
| [B] Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) | SULDN00279 | Q30TX0 | Ribonuclease |
| [B] Wolinella succinogenes | WOLSU01553 | Q7M8D3 | RIBONUCLEASE HII RNASE HII |
| [B] Nitratiruptor sp. (strain SB155-2) | NITSB00218 | A6Q1H3 | Ribonuclease |
| [B] Sulfurovum sp. (strain NBC37-1) | SULNB02256 | RNH2_SULNB | Ribonuclease |
| [B] Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) | ACIF201355 | B7JA37 | Ribonuclease |
| [B] Acidithiobacillus ferrooxidans (strain ATCC 53993) | ACIF501118 | B5EQR4 | Ribonuclease H |
| [B] Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) | AERHH01145 | ABK37833.1 | ribonuclease HII identified by match to protein family HMM PF01351 |
| [B] Aeromonas salmonicida (strain A449) | AERS402834 | RNH2_AERS4 | Ribonuclease HII |
| [B] Alteromonas macleodii (strain DSM 17117 / Deep ecotype) | ALTMD01370 | RNH2_ALTMD | Ribonuclease HII |
| [B] Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) | MARAV02427 | RNH2_MARAV | Ribonuclease H PFAM: ribonuclease HII/HIII KEGG: stm:STM0230 RNAse HII |
| [B] Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) | SACD202568 | RNH2_SACD2 | Ribonuclease H |
| [B] Colwellia psychrerythraea (strain 34H / ATCC BAA-681) | COLP301506 | RNH2_COLP3 | identified by similarity to SP:P10442; match to protein family HMM PF01351 ribonuclease HII |
| [B] Idiomarina loihiensis | IDILO01648 | RNH2_IDILO | Ribonuclease HII |
| [B] Pseudoalteromonas atlantica (strain T6c / BAA-1087) | PSEA601252 | RNH2_PSEA6 | Ribonuclease H |
| [B] Pseudoalteromonas haloplanktis (strain TAC 125) | PSEHT01955 | RNH2_PSEHT | Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 55002; Product type e : enzyme RNAse HII |
| [B] Psychromonas ingrahamii (strain 37) | PSYIN02778 | RNH2_PSYIN | Ribonuclease H PFAM: ribonuclease HII/HIII KEGG: vpa:VP2304 ribonuclease HII |
| [B] Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) | SHEAM01145 | RNH2_SHEAM | Ribonuclease H KEGG: sdn:Sden_1568 ribonuclease H |
| [B] Shewanella baltica (strain OS155 / ATCC BAA-1091) | SHEB501392 | RNH2_SHEB5 | Ribonuclease |
| [B] Shewanella baltica (strain OS185) | SHEB801428 | RNH2_SHEB8 | Ribonuclease |
| [B] Shewanella baltica (strain OS195) | SHEB901476 | RNH2_SHEB9 | PFAM: ribonuclease HII/HIII KEGG: shw:Sputw3181_2741 ribonuclease H Ribonuclease H |
| [B] Shewanella baltica (strain OS223) | SHEB202795 | RNH2_SHEB2 | Ribonuclease |
| [B] Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) | SHEDO01537 | RNH2_SHEDO | Ribonuclease H |
| [B] Shewanella frigidimarina (strain NCIMB 400) | SHEFN01261 | RNH2_SHEFN | Ribonuclease H |
| [B] Shewanella halifaxensis (strain HAW-EB4) | SHEHH02938 | RNH2_SHEHH | Ribonuclease H |
| [B] Shewanella loihica (strain BAA-1088 / PV-4) | SHELP02610 | RNH2_SHELP | Ribonuclease H PFAM: ribonuclease HII/HIII KEGG: sfr:Sfri_1284 ribonuclease H |
| [B] Shewanella oneidensis | SHEON01554 | RNH2_SHEON | Ribonuclease HII |
| [B] Shewanella pealeana (strain ANG-SQ1 / ATCC 700345) | SHEPA02805 | RNH2_SHEPA | PFAM: ribonuclease HII/HIII KEGG: slo:Shew_2621 ribonuclease H Ribonuclease H |
| [B] Shewanella piezotolerans (strain WP3 / JCM 13877) | SHEPW03325 | RNH2_SHEPW | Ribonuclease HII |
| [B] Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) | SHEPC01335 | RNH2_SHEPC | Ribonuclease |
| [B] Shewanella sediminis (strain HAW-EB3) | SHESH03134 | RNH2_SHESH | KEGG: slo:Shew_2621 ribonuclease H Ribonuclease H |
| [B] Shewanella sp. (strain ANA-3) | SHESA02766 | RNH2_SHESA | ribonuclease HII/HIII PFAM: ribonuclease HII/HIII KEGG: son:SO1643 ribonuclease HII |
| [B] Shewanella sp. (strain MR-4) | SHESM02610 | RNH2_SHESM | Ribonuclease H |
| [B] Shewanella sp. (strain MR-7) | SHESR02663 | RNH2_SHESR | Ribonuclease H |
| [B] Shewanella sp. (strain W3-18-1) | SHESW02676 | RNH2_SHESW | Ribonuclease H PFAM: ribonuclease HII/HIII KEGG: shm:Shewmr7_2694 ribonuclease H |
| [B] Shewanella woodyi (strain ATCC 51908 / MS32) | SHEWM03224 | RNH2_SHEWM | Ribonuclease |
| [B] Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) | NITOC01904 | RNH2_NITOC | Ribonuclease H |
| [B] Alkalilimnicola ehrlichei (strain MLHE-1) | ALHEH01832 | RNH2_ALHEH | Ribonuclease H |
| [B] Halorhodospira halophila (strain DSM 244 / SL1) | HALHL01424 | RNH2_HALHL | Ribonuclease H |
| [B] Thioalkalivibrio sp. (strain HL-EbGR7) | THISH01149 | RNH2_THISH | Ribonuclease |
| [B] Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) | CITK803076 | RNH2_CITK8 | Ribonuclease HII |
| [B] Enterobacter sakazakii (strain ATCC BAA-894) | ENTS803068 | RNH2_ENTS8 | Putative uncharacterized protein |
| [B] Enterobacter sp. (strain 638) | ENT3800717 | RNH2_ENT38 | Ribonuclease HII |
| [B] Erwinia tasmaniensis (strain DSM 17950 / ET1/99) | ERWT900903 | RNH2_ERWT9 | Ribonuclease HII |
| [B] Escherichia coli (strain 55989 / EAEC) | ECO5500174 | RNH2_ECO55 | Ribonuclease |
| [B] Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) | ECOLC03376 | RNH2_ECOLC | Ribonuclease HII |
| [B] Escherichia coli (strain DH10B) | ECODH00155 | RNH2_ECODH | Ribonuclease HII, degrades RNA of DNA-RNA hybrids |
| [B] Escherichia coli (strain K12) | ECOLI00176 | RNH2_ECOLI | Ribonuclease HII |
| [B] Escherichia coli (strain SE11) | ECOSE00181 | RNH2_ECOSE | Ribonuclease HII |
| [B] Escherichia coli (strain SMS-3-5 / SECEC) | ECOSM00194 | RNH2_ECOSM | Ribonuclease |
| [B] Escherichia coli (strain UTI89 / UPEC) | ECOUT00198 | RNH2_ECOUT | RNAse HII, degrades RNA of DNA-RNA hybrids |
| [B] Escherichia coli O127:H6 (strain E2348/69 / EPEC) | ECO2700186 | RNH2_ECO27 | Ribonuclease |
| [B] Escherichia coli O139:H28 (strain E24377A / ETEC) | ECO2400182 | RNH2_ECO24 | Ribonuclease HII |
| [B] Escherichia coli O157:H7 | ECO5700185 | RNH2_ECO57 | Residues 1 to 198 of 198 are 99.49 pct identical to residues 1 to 198 of 198 from Escherichia coli K-12 Strain MG1655: B0183 RNAse HII, degrades RNA of DNA-RNA hybrids |
| [B] Escherichia coli O157:H7 (strain EC4115 / EHEC) | ECO5E00183 | RNH2_ECO5E | Ribonuclease HII |
| [B] Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) | ECOLU00176 | RNH2_ECOLU | Ribonuclease HII |
| [B] Escherichia coli O1:K1 / APEC | ECOK100173 | RNH2_ECOK1 | ribonuclease HII |
| [B] Escherichia coli O45:K1 (strain S88 / ExPEC) | ECO4500188 | RNH2_ECO45 | Ribonuclease HII |
| [B] Escherichia coli O6 | ECOL600208 | RNH2_ECOL6 | Ribonuclease HII |
| [B] Escherichia coli O6:K15:H31 (strain 536) | ECOL500191 | RNH2_ECOL5 | ribonuclease HII |
| [B] Escherichia coli O7:K1 (strain IAI39 / ExPEC) | ECO7I00182 | RNH2_ECO7I | Ribonuclease HII |
| [B] Escherichia coli O81 (strain ED1a) | ECO8100183 | RNH2_ECO81 | Ribonuclease |
| [B] Escherichia coli O9:H4 (strain HS) | ECOHS00178 | RNH2_ECOHS | Ribonuclease HII |
| [B] Klebsiella pneumoniae (strain 342) | KLEP304419 | RNH2_KLEP3 | Ribonuclease HII |
| [B] Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) | KLEP700195 | RNH2_KLEP7 | Ribonuclease HII |
| [B] Erwinia carotovora (subsp. atroseptica) | ERWCT01031 | RNH2_ERWCT | Similar to Escherichia coli ribonuclease HII RnhB or b0183 SWALL:RNH2_ECOLI (SWALL:P10442) (198 aa) fasta scores: E(): 3.4e-59, 81.95% id in 194 aa ribonuclease HII |
| [B] Photorhabdus luminescens (subsp. laumondii) | PHOLL00671 | RNH2_PHOLL | Ribonuclease HII (RNase HII) |
| [B] Proteus mirabilis (strain HI4320) | PROMH02246 | RNH2_PROMH | Ribonuclease HII |
| [B] Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) | SALAR02658 | RNH2_SALAR | Putative uncharacterized protein |
| [B] Salmonella agona (strain SL483) | SALA400255 | RNH2_SALA4 | Ribonuclease HII |
| [B] Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 | SALCH00229 | RNH2_SALCH | RNAse HII |
| [B] Salmonella dublin (strain CT_02021853) | SALDC00235 | RNH2_SALDC | Ribonuclease HII |
| [B] Salmonella enteritidis PT4 (strain P125109) | SALEP00233 | RNH2_SALEP | Ribonuclease HII |
| [B] Salmonella gallinarum (strain 287/91 / NCTC 13346) | SALG200229 | RNH2_SALG2 | Ribonuclease HII |
| [B] Salmonella heidelberg (strain SL476) | SALHS00250 | RNH2_SALHS | Ribonuclease HII |
| [B] Salmonella newport (strain SL254) | SALNS00242 | RNH2_SALNS | Ribonuclease HII |
| [B] Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) | SALPB00291 | RNH2_SALPB | Putative uncharacterized protein |
| [B] Salmonella paratyphi A (strain AKU_12601) | SALPK00234 | RNH2_SALPK | Ribonuclease HII |
| [B] Salmonella paratyphi-a | SALPA00225 | RNH2_SALPA | similar to Salmonella typhi CT18 ribonuclease HII ribonuclease HII |
| [B] Salmonella schwarzengrund (strain CVM19633) | SALSV00244 | RNH2_SALSV | Ribonuclease HII |
| [B] Salmonella typhi | SALTI00229 | RNH2_SALTI | Ribonuclease HII |
| [B] Salmonella typhimurium | SALTY00227 | RNH2_SALTY | ribonuclease HII (SW:RNH2_SALTY) RNAse HII |
| [B] Serratia proteamaculans (strain 568) | SERP503750 | RNH2_SERP5 | Ribonuclease HII |
| [B] Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) | SHIB300154 | RNH2_SHIB3 | Ribonuclease HII |
| [B] Shigella boydii serotype 4 (strain Sb227) | SHIBS00158 | RNH2_SHIBS | degrades RNA of DNA-RNA hybrids; Code: L; COG: COG0164 RNAse HII |
| [B] Shigella dysenteriae serotype 1 (strain Sd197) | SHIDS00171 | RNH2_SHIDS | degrades RNA of DNA-RNA hybrids; Code: L; COG: COG0164 RNAse HII |
| [B] Shigella flexneri | SHIFL00169 | RNH2_SHIFL | Residues 1 to 198 of 198 are 99 pct identical to residues 1 to 198 of a 198 aa protein from Escherichia coli K12 ref: NP_414725.1 RNAse HII, degrades RNA of DNA-RNA hybrids |
| [B] Shigella flexneri serotype 5b (strain 8401) | SHIF800159 | RNH2_SHIF8 | RNAse HII Code: L; COG: COG0164 |
| [B] Shigella sonnei (strain Ss046) | SHISS00174 | RNH2_SHISS | degrades RNA of DNA-RNA hybrids; Code: L; COG: COG0164 RNAse HII |
| [B] Sodalis glossinidius (strain morsitans) | SODGM01895 | RNH2_SODGM | ribonuclease HII |
| [B] Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) | YERE803089 | RNH2_YERE8 | Ribonuclease HII |
| [B] Yersinia pestis | YERPE00982 | RNH2_YERPE | Ribonuclease HII |
| [B] Yersinia pestis (biovar Antiqua strain Antiqua) | YERPA00503 | RNH2_YERPA | Ribonuclease HII |
| [B] Yersinia pestis (biovar Antiqua strain Nepal516) | YERPN02815 | RNH2_YERPN | Ribonuclease HII |
| [B] Yersinia pestis (strain Pestoides F) | YERPP01555 | RNH2_YERPP | Ribonuclease HII |
| [B] Yersinia pestis bv. Antiqua (strain Angola) | YERPG02935 | RNH2_YERPG | Ribonuclease |
| [B] Yersinia pseudotuberculosis | YERPS02968 | RNH2_YERPS | Ribonuclease HII |
| [B] Yersinia pseudotuberculosis (serotype O:1b / strain IP 31758) | YERP300997 | RNH2_YERP3 | Ribonuclease HII |
| [B] Yersinia pseudotuberculosis serotype IB (strain PB1/+) | YERPB03044 | RNH2_YERPB | Ribonuclease HII/HIII |
| [B] Yersinia pseudotuberculosis serotype O:3 (strain YPIII) | YERPY01058 | RNH2_YERPY | Ribonuclease |
| [B] Blochmannia pennsylvanicus (strain BPEN) | BLOPB00275 | RNH2_BLOPB | ortholog to Escherichia coli bnum: b0183; MultiFun: Information transfer 2.2.4; Metabolism 1.2.1 ribonuclease HII |
| [B] Candidatus Blochmannia floridanus | BLOFL00270 | RNH2_BLOFL | COG caterory=L ribonuclease HII |
| [B] Coxiella burnetii | COXBU01260 | RNH2_COXBU | similar to GB:X65561, and PID:296267; identified by sequence similarity; putative ribonuclease HII |
| [B] Coxiella burnetii (strain CbuG_Q212) | COXB200583 | RNH2_COXB2 | Ribonuclease HII |
| [B] Coxiella burnetii (strain Dugway 5J108-111) | COXBN01325 | RNH2_COXBN | Ribonuclease HII |
| [B] Coxiella burnetii (strain RSA 331 / Henzerling II) | COXBR01239 | RNH2_COXBR | Ribonuclease HII |
| [B] Legionella pneumophila (strain Corby) | LEGPC00764 | RNH2_LEGPC | Ribonuclease |
| [B] Legionella pneumophila (strain Paris) | LEGPA01323 | RNH2_LEGPA | Similar to ribonuclease HII hypothetical protein |
| [B] Methylococcus capsulatus | METCA02293 | RNH2_METCA | identified by similarity to SP:P10442; match to protein family HMM PF01351 ribonuclease HII |
| [B] Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) | ALCBS01155 | RNH2_ALCBS | Ribonuclease H |
| [B] Hahella chejuensis (strain KCTC 2396) | HAHCH04939 | RNH2_HAHCH | Ribonuclease HII COG0164 |
| [B] Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) | CHRSD00574 | RNH2_CHRSD | Ribonuclease H |
| [B] Marinomonas sp. (strain MWYL1) | MARMS01264 | RNH2_MARMS | Ribonuclease |
| [B] Actinobacillus pleuropneumoniae serotype 3 (strain JL03) | ACTPJ00128 | RNH2_ACTPJ | Ribonuclease HII |
| [B] Actinobacillus pleuropneumoniae serotype 5b (strain L20) | ACTP200128 | RNH2_ACTP2 | Ribonuclease HII |
| [B] Actinobacillus pleuropneumoniae serotype 7 (strain AP76) | ACTP700131 | RNH2_ACTP7 | Ribonuclease HII |
| [B] Actinobacillus succinogenes (strain ATCC 55618 / 130Z) | ACTSZ01857 | RNH2_ACTSZ | Ribonuclease HII |
| [B] Haemophilus ducreyi | HAEDU00879 | RNH2_HAEDU | ribonuclease HII |
| [B] Haemophilus influenzae | HAEIN01043 | RNH2_HAEIN | Ribonuclease HII |
| [B] Haemophilus influenzae (strain 86-028NP) | HAEI801065 | RNH2_HAEI8 | RNase HII; Similar to: HI1059, RNH2_HAEIN ribonuclease HII |
| [B] Haemophilus influenzae (strain PittEE) | HAEIE01188 | RNH2_HAEIE | Ribonuclease HII |
| [B] Haemophilus influenzae (strain PittGG) | HAEIG01462 | RNH2_HAEIG | Ribonuclease HII |
| [B] Haemophilus parasuis serovar 5 (strain SH0165) | HAEPS01542 | B8F7G9 | Ribonuclease |
| [B] Haemophilus somnus (strain 129PT) | HAES101360 | RNH2_HAES1 | Ribonuclease HII |
| [B] Haemophilus somnus (strain 2336) | HAES200253 | RNH2_HAES2 | Ribonuclease HII |
| [B] Mannheimia succiniciproducens (strain MBEL55E) | MANSM00423 | RNH2_MANSM | Ribonuclease HII RnhB protein |
| [B] Pasteurella multocida | PASMU01998 | RNH2_PASMU | Ribonuclease HII |
| [B] Acinetobacter sp. (strain ADP1) | ACIAD01131 | RNH2_ACIAD | Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme RNAse HII |
| [B] Pseudomonas aeruginosa | PSEAE03634 | RNH2_PSEAE | Ribonuclease HII |
| [B] Pseudomonas aeruginosa (strain LESB58) | PSEA801377 | RNH2_PSEA8 | Ribonuclease HII |
| [B] Pseudomonas aeruginosa (strain PA7) | PSEA701454 | RNH2_PSEA7 | Ribonuclease HII |
| [B] Pseudomonas aeruginosa (strain UCBPP-PA14) | PSEAB01363 | RNH2_PSEAB | ribonuclease HII |
| [B] Pseudomonas entomophila (strain L48) | PSEE403890 | RNH2_PSEE4 | ribonuclease HII Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme |
| [B] Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) | PSEF501169 | RNH2_PSEF5 | identified by match to protein family HMM PF01351 ribonuclease HII |
| [B] Pseudomonas fluorescens (strain PfO-1) | PSEPF01110 | RNH2_PSEPF | Ribonuclease H |
| [B] Pseudomonas mendocina (strain ymp) | PSEMY02994 | RNH2_PSEMY | Ribonuclease HII |
| [B] Pseudomonas putida (strain F1 / ATCC 700007) | PSEP104112 | RNH2_PSEP1 | Ribonuclease HII |
| [B] Pseudomonas putida (strain GB-1) | PSEPG01149 | RNH2_PSEPG | Ribonuclease H unknown EC_number=3.1.26.4 PFAM: ribonuclease HII/HIII KEGG: pen:PSEEN4206 ribonuclease HII |
| [B] Pseudomonas putida (strain KT2440) | PSEPK01585 | RNH2_PSEPK | similar to GB:X65561, and PID:296267; identified by sequence similarity; putative ribonuclease HII |
| [B] Pseudomonas putida (strain W619) | PSEPW04040 | RNH2_PSEPW | Ribonuclease |
| [B] Pseudomonas stutzeri (strain A1501) | PSEU501506 | RNH2_PSEU5 | Ribonuclease HII |
| [B] Pseudomonas syringae (pv. tomato) | PSESM01460 | RNH2_PSESM | ribonuclease HII |
| [B] Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) | PSE1403571 | RNH2_PSE14 | identified by match to protein family HMM PF01351 Ribonuclease HII (RNase HII) |
| [B] Pseudomonas syringae pv. syringae (strain B728a) | PSEU201344 | RNH2_PSEU2 | Ribonuclease H |
| [B] Francisella philomiragia subsp. philomiragia (strain ATCC 25017) | FRAP201360 | RNH2_FRAP2 | Ribonuclease H |
| [B] Francisella tularensis (subsp. tularensis) | FRATT01235 | RNH2_FRATT | Similar to Q83BZ8 Ribonuclease HII from Coxiella burnetii (202 aa). FASTA: opt: 660 Z-score: 808.3 E(): 3.9e-37 Smith-Waterman score: 660; 54.891 identity in 184 aa overlap. Ribonuclease HII |
| [B] Francisella tularensis subsp. holarctica (strain FTA) | FRATF00928 | RNH2_FRATF | Ribonuclease HII |
| [B] Francisella tularensis subsp. holarctica (strain LVS) | FRATH01120 | RNH2_FRATH | Ribonuclease HII |
| [B] Francisella tularensis subsp. holarctica (strain OSU18) | FRATO00922 | RNH2_FRATO | Ribonuclease H |
| [B] Francisella tularensis subsp. mediasiatica (strain FSC147) | FRATM00856 | RNH2_FRATM | Ribonuclease HII |
| [B] Francisella tularensis subsp. novicida (strain U112) | FRATN01263 | RNH2_FRATN | ribonuclease HII |
| [B] Francisella tularensis subsp. tularensis (strain WY96-3418) | FRATW00422 | RNH2_FRATW | Ribonuclease HII |
| [B] Mycobacteriophage FRAT1 | FRAT101234 | RNH2_FRAT1 | Ribonuclease HII Similar to Q83BZ8 Ribonuclease HII from Coxiella burnetii (202 aa). FASTA: opt: 660 Z-score: 808.3 E(): 3.9e-37 Smith-Waterman score: 660; 54.891 identity in 184 aa overlap. |
| [B] Thiomicrospira crunogena (strain XCL-2) | THICR01269 | RNH2_THICR | Ribonuclease H |
| [B] Aliivibrio salmonicida (strain LFI1238) | ALISL02138 | RNH2_ALISL | Ribonuclease HII |
| [B] Vibrio fischeri (strain MJ11) | VIBFM02003 | RNH2_VIBFM | Ribonuclease HII |
| [B] Photobacterium profundum | PHOPR02730 | RNH2_PHOPR | putative ribonuclease HII |
| [B] Vibrio cholerae | VIBCH02207 | RNH2_VIBCH | similar to PID:940887 SP:P52021 PID:940885; identified by sequence similarity; putative ribonuclease HII |
| [B] Vibrio cholerae (strain ATCC 39541 / O395) | VIBC301709 | RNH2_VIBC3 | Ribonuclease HII |
| [B] Vibrio cholerae serotype O1 (strain M66-2) | VIBCM02121 | RNH2_VIBCM | |
| [B] Vibrio fischeri (strain ATCC 700601 / ES114) | VIBF101944 | RNH2_VIBF1 | ribonuclease HII |
| [B] Vibrio harveyi (strain ATCC BAA-1116 / BB120) | VIBHB02839 | RNH2_VIBHB | Putative uncharacterized protein |
| [B] Vibrio parahaemolyticus | VIBPA02299 | RNH2_VIBPA | similar to GB:AAF95390.1 (AE004296) percent identity 83 in 203 aa ribonuclease HII |
| [B] Vibrio splendidus (strain LGP32) | VIBSL02209 | RNH2_VIBSL | Ribonuclease |
| [B] Vibrio vulnificus | VIBVU01684 | RNH2_VIBVU | COG0164 Ribonuclease HII |
| [B] Vibrio vulnificus (strain YJ016) | VIBVY02514 | RNH2_VIBVY | Ribonuclease HII |
| [B] Stenotrophomonas maltophilia (strain K279a) | STRMK01395 | B2FHN4 | Putative ribonuclease HII precursor |
| [B] Stenotrophomonas maltophilia (strain R551-3) | STRM501248 | B4SQ09 | Ribonuclease H |
| [B] Xanthomonas axonopodis (pv. citri) | XANAC01370 | RNH2_XANAC | identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ribonuclease HII |
| [B] Xanthomonas campestris pv. campestris | XANCP01326 | RNH2_XANCP | Ribonuclease HII |
| [B] Xanthomonas campestris pv. campestris (strain 8004) | XANC802786 | RNH2_XANC8 | ribonuclease HII |
| [B] Xanthomonas campestris pv. campestris (strain B100) | XANCB02917 | RNH2_XANCB | Ribonuclease HII |
| [B] Xanthomonas oryzae (pv. oryzae) | XANOR01767 | RNH2_XANOR | identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ribonuclease HII |
| [B] Xanthomonas oryzae pv. oryzae (strain MAFF 311018) | XANOM01708 | RNH2_XANOM | ribonuclease HII identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker |
| [B] Xanthomonas oryzae pv. oryzae (strain PXO99A) | XANOP02554 | B2SR13 | Ribonuclease HII |
| [B] Xylella fastidiosa | XYLFA01035 | RNH2_XYLFA | similar to SP|P10442 (percent identity: 55 %/query alignment coverage: 81.6 %/subject alignment coverage: 96.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder ribonuclease HII |
| [B] Xylella fastidiosa (strain M12) | XYLFM00313 | RNH2_XYLFM | Ribonuclease |
| [B] Xylella fastidiosa (strain M23) | XYLF200305 | RNH2_XYLF2 | Ribonuclease H |
| [B] Xylella fastidiosa (strain Temecula1 / ATCC 700964) | XYLFT00295 | RNH2_XYLFT | Ribonuclease HII |
| [B] Magnetococcus sp. (strain MC-1) | MAGSM00489 | RNH2_MAGSM | Ribonuclease H PFAM: ribonuclease HII/HIII KEGG: sil:SPO3452 ribonuclease HII |
| [B] Borrelia afzelii (strain PKo) | BORAP00045 | RNH2_BORAP | Ribonuclease H |
| [B] Borrelia burgdorferi | BORBU00046 | RNH2_BORBU | similar to GB:L42023 SP:P43808 PID:1006316 PID:1221175 PID:1205308 percent identity: 44.13; identified by sequence similarity; putative ribonuclease H (rnhB) |
| [B] Borrelia burgdorferi (strain ZS7) | BORBZ00045 | RNH2_BORBZ | Ribonuclease HII |
| [B] Borrelia duttonii (strain Ly) | BORDL00048 | RNH2_BORDL | Ribonuclease H |
| [B] Borrelia garinii | BORGA00045 | RNH2_BORGA | Ribonuclease HII |
| [B] Borrelia hermsii (strain DAH) | BORHD00044 | RNH2_BORHD | Ribonuclease HII |
| [B] Borrelia recurrentis (strain A1) | BORRA00046 | RNH2_BORRA | Ribonuclease H |
| [B] Borrelia turicatae (strain 91E135) | BORT900045 | A1QYJ8 | Ribonuclease HII |
| [B] Treponema denticola | TREDE01534 | RNH2_TREDE | identified by similarity to SP:P10442; match to protein family HMM PF01351 ribonuclease HII |
| [B] Acholeplasma laidlawii (strain PG-8A) | ACHLI00316 | RNH2_ACHLI | Ribonuclease HII |
| [B] Mesoplasma florum | MESFL00539 | Q6F0S8 | Ribonuclease HII, primer excision |
| [B] Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) | MYCCT00512 | RNH2_MYCCT | ribonuclease HII, putative identified by match to protein family HMM PF01351 |
| [B] Mycoplasma mycoides subsp. mycoides SC | MYCMS00399 | RNH2_MYCMS | Ribonuclease HII |
| [B] Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) | FERNB01288 | A7HMP9 | Ribonuclease |
| [B] Petrotoga mobilis (strain DSM 10674 / SJ95) | PETMO01612 | A9BI79 | Ribonuclease |
| [B] Thermosipho africanus (strain TCF52B) | THEAB00203 | RNH2_THEAB | Ribonuclease HII |
| [B] Thermosipho melanesiensis (strain BI429 / DSM 12029) | THEM401858 | RNH2_THEM4 | Ribonuclease |
| [B] Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) | THELT00890 | RNH2_THELT | Ribonuclease |
| [B] Thermotoga maritima | THEMA00904 | RNH2_THEMA | Ribonuclease HII |
| [B] Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) | THEP100012 | RNH2_THEP1 | Ribonuclease HII |
| [B] Thermotoga sp. (strain RQ2) | THESQ00012 | RNH2_THESQ | Ribonuclease |
| [B] Methylokorus infernorum (strain V4) | METI401266 | B3DVH3 | Ribonuclease HII |
| [B] Elusimicrobium minutum (strain Pei191) | ELUMP00615 | B2KC56 | Ribonuclease H |
| [B] Uncultured termite group 1 bacterium phylotype Rs-D17 | UNCTG00017 | RNH2_UNCTG | Ribonuclease |