List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 196531

family 46
This group has 4 members: 4 [B]acteria
Fingerprint: NSSLDWK

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589)RENSM03018  UniProtKB/TrEMBL A9WUI6  Chitosanase
[B] Phytoplasma sp. (strain STRAWB1)STRAW02016  UniProtKB/TrEMBL Q82LJ5  Putative chitosanase, secreted
[B] Streptomyces coelicolorSTRCO00661  UniProtKB/TrEMBL Q9RJ88  SCF91.37, csn, secreted chitosanase (EC 3.2.1.132), len: 280 aa. Highly similar to several including: Streptomyces sp. (strain N174) SW:CHIS_STRSQ (EMBL:L07779) chitosanase precursor (EC 3.2.1.132) (278 aa), fasta scores opt: 1122 z-score: 1263.9 E():0 64.3% identity in 272 aa overlap and Streptomyces coelicolor TR:CAB52859 (EMBL:AL109849) putative chitosanase (305 aa), fasta scores opt: 954 z-score: 1075.3 E():0 63.7% identity in 234 aa overlap. Contains a Pfam match to entry PF01374 Glyco_hydro_46, Glycosyl hydrolase family 46 and a possible N-terminal signal sequence. secreted chitosanase
[B] Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052)CLOB800937  UniProtKB/TrEMBL A6LS03  Glycoside hydrolase, family 46 precursor