List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 17558

acid dehydrogenase
This group has 21 members: 21 [B]acteria
Fingerprint: HRYAAME

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Rhodopseudomonas palustris (strain HaA2)RHOP201121  UniProtKB/TrEMBL Q2J126  D-amino-acid dehydrogenase
[B] Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831)METRJ01504  UniProtKB/TrEMBL B1M5E6  D-amino-acid dehydrogenase precursor
[B] Rhizobium lotiRHILO06876  UniProtKB/Swiss-Prot DADA3_RHILO  D-amino acid dehydrogenase small subunit
[B] Bordetella bronchisepticaBORBR02761  UniProtKB/TrEMBL Q7WIS4  D-amino acid dehydrogenase small subunit
[B] Bordetella parapertussisBORPA02686  UniProtKB/TrEMBL Q7W717  Similar to Rhizobium loti D-amino acid dehydrogenase 3 small subunit DadA3 or MLR9201 SWALL:DAD3_RHILO (SWALL:Q981X2) (412 aa) fasta scores: E(): 1.7e-101, 64.25% id in 400 aa, and to Escherichia coli D-amino acid dehydrogenase small subunit DadA or DadR or B1189 or Z1952 or ECS1684 SWALL:DADA_ECOLI (SWALL:P29011) (432 aa) fasta scores: E(): 4e-39, 33.25% id in 403 aa D-amino acid dehydrogenase small subunit
[B] Burkholderia vietnamiensis (strain G4 / LMG 22486)BURVG06350  UniProtKB/TrEMBL A4JTF9  D-amino-acid dehydrogenase precursor
[B] Burkholderia xenovorans (strain LB400)BURXL05973  UniProtKB/TrEMBL Q13MS4  D-amino acid dehydrogenase small subunit
[B] Cupriavidus taiwanensis (strain R1 / LMG 19424)CUPTR03453  UniProtKB/TrEMBL B2AIC2  D-amino acid dehydrogenase, small subunit; similar to dadA
[B] Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337)RALEH04144  UniProtKB/TrEMBL Q0K3W9  D-amino-acid dehydrogenase
[B] Ralstonia eutropha (strain JMP134)RALEJ03692  UniProtKB/TrEMBL Q46UV0  D-amino-acid dehydrogenase
[B] Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839)RALME05441  UniProtKB/TrEMBL Q1LBN7  FAD dependent oxidoreductase
[B] Ralstonia pickettii (strain 12J)RALPJ04170  UniProtKB/TrEMBL B2UIK2  D-amino-acid dehydrogenase
[B] Polaromonas sp. (strain JS666 / ATCC BAA-500)POLSJ04106  UniProtKB/TrEMBL Q124F6  D-amino-acid dehydrogenase
[B] Acinetobacter baumannii (strain AB0057)ACIB502205  UniProtKB/TrEMBL B7I9W2  D-amino acid dehydrogenase 3 small subunit
[B] Acinetobacter baumannii (strain AB307-0294)ACIB301419  UniProtKB/TrEMBL B7H1F1  D-amino acid dehydrogenase small subunit
[B] Acinetobacter baumannii (strain ACICU)ACIBC02099  UniProtKB/TrEMBL B2I338  Glycine/D-amino acid oxidase
[B] Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755)ACIBT01910   ABO12411.1  D-amino acid dehydrogenase small subunit
[B] Acinetobacter baumannii (strain AYE)ACIBY01461  UniProtKB/TrEMBL B0V6G1  D-amino acid dehydrogenase, small subunit
[B] Acinetobacter baumannii (strain SDF)ACIBS01437  UniProtKB/TrEMBL B0VMT4  D-amino acid dehydrogenase, small subunit
[B] Acinetobacter sp. (strain ADP1)ACIAD01818  UniProtKB/TrEMBL Q6FAU2  Evidence 2b : Function of strongly homologous gene; Product type e : enzyme D-amino acid dehydrogenase, small subunit
[B] Pseudomonas stutzeri (strain A1501)PSEU503989  UniProtKB/TrEMBL A4VRY1  D-amino acid dehydrogenase, small subunit