List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 24862

signal peptidase
This group has 11 members: 11 [B]acteria
Fingerprint: HGKVVDM

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Bacteroides fragilisBACFR02269  UniProtKB/TrEMBL Q64U05  similar to gp:AE016929_78 [Bacteroides thetaiotaomicron VPI-5482], percent identity 93 in 172 aa, BLASTP E(): 1e-96 putative signal peptidase
[B] Bacteroides fragilis (strain ATCC 25285 / NCTC 9343)BACFN02284  UniProtKB/TrEMBL Q5LCU6  Similar to Staphylococcus carnosus lipoprotein signal peptidase LspA or Lsp SWALL:LSPA_STACA (SWALL:Q59835) (159 aa) fasta scores: E(): 6e-05, 33.62% id in 113 aa, and to Clostridium tetani lipoprotein signal peptidase CTC01615 SWALL:AAO36158 (EMBL:AE015941) (156 aa) fasta scores: E(): 2.1e-06, 31.28% id in 195 aa putative signal peptidase
[B] Bacteroides thetaiotaomicronBACTN00804  UniProtKB/TrEMBL Q8A9K7  Putative signal peptidase
[B] Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154)BACV802892  UniProtKB/TrEMBL A6L4T4  Putative signal peptidase
[B] Azobacteroides pseudotrichonymphae genomovar. CFP2AZOPC00245  UniProtKB/TrEMBL B6YQN8  Signal peptidase II
[B] Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)PARD800426  UniProtKB/TrEMBL A6L964  Putative signal peptidase
[B] Amoebophilus asiaticus (strain 5a2)AMOA500017  UniProtKB/Swiss-Prot LSPA_AMOA5  Lipoprotein signal peptidase-like protein
[B] Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101)FLAJ100697  UniProtKB/TrEMBL A5FM42  Putative uncharacterized protein
[B] Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511)FLAPJ00216  UniProtKB/TrEMBL A6GW62  Signal peptidase II
[B] Gramella forsetii (strain KT0803)GRAFK03103  UniProtKB/TrEMBL A0M679  lipoprotein signal peptidase
[B] Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)CYTH303604  UniProtKB/TrEMBL Q11NV3  signal peptidase II