List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 303907

DNA polymerase II
This group has 37 members: 37 [A]rchaea
Fingerprint: NCDGDED

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[A] Nitrosopumilus maritimus (strain SCM1)NITMS01790  UniProtKB/TrEMBL A9A3Z0  DNA polymerase II, large subunit DP2
[A] Archaeoglobus fulgidusARCFU01692  UniProtKB/Swiss-Prot DP2L_ARCFU  DNA polymerase II large subunit
[A] Haloarcula marismortuiHALMA02374  UniProtKB/Swiss-Prot DP2L_HALMA  DNA polymerase II large subunit
[A] Halobacterium salinariumHALSA01792  UniProtKB/Swiss-Prot DP2L_HALSA  DNA polymerase II large subunit
[A] Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)HALS301858  UniProtKB/TrEMBL B0R7M9  DNA-directed DNA polymerase type III subunit 2
[A] Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34)HALLT00148  UniProtKB/TrEMBL B9LRD2  DNA polymerase II, large subunit DP2
[A] Natronomonas pharaonis (strain DSM 2160 / ATCC 35678)NATPD00236  UniProtKB/Swiss-Prot DP2L_NATPD  DNA-directed DNA polymerase (EC 2.7.7.7) large subunit (family D) (archaeal DNA polymerase II)
[A] Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861)METS301373  UniProtKB/TrEMBL A5UN11  DNA polymerase II, large subunit, PolC
[A] Methanosphaera stadtmanae (strain DSM 3091)METST00247  UniProtKB/Swiss-Prot DP2L_METST  PolC archaeal DNA polymerase II, large subunit
[A] Methanobacterium thermoautotrophicumMETTH01498  UniProtKB/Swiss-Prot DP2L_METTH  DNA polymerase II large subunit
[A] Methanocaldococcus jannaschiiMETJA01675  UniProtKB/Swiss-Prot DP2L_METJA  DNA polymerase II large subunit
[A] Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280)META301125  UniProtKB/TrEMBL A6UW46  DNA polymerase II, large subunit DP2
[A] Methanococcus maripaludisMETMP00026  UniProtKB/Swiss-Prot DP2L_METMP  DNA polymerase II large subunit
[A] Methanococcus maripaludis (strain C5 / ATCC BAA-1333)METM501635  UniProtKB/Swiss-Prot DP2L_METM5  DNA polymerase II, large subunit DP2
[A] Methanococcus maripaludis (strain C6 / ATCC BAA-1332)METM600911  UniProtKB/Swiss-Prot DP2L_METM6  DNA polymerase II, large subunit DP2
[A] Methanococcus maripaludis (strain C7 / ATCC BAA-1331)METM701016  UniProtKB/Swiss-Prot DP2L_METM7  DNA polymerase II, large subunit DP2
[A] Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224)METVS01162  UniProtKB/Swiss-Prot DP2L_METVS  DNA polymerase II, large subunit DP2
[A] Methanoregula boonei (strain 6A8)METB600126  UniProtKB/TrEMBL A7I4I9  DNA polymerase II, large subunit DP2
[A] Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z)METLZ01682  UniProtKB/Swiss-Prot DP2L_METLZ  Hypothetical protein
[A] Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)METMJ02097  UniProtKB/Swiss-Prot DP2L_METMJ  DNA polymerase II, large subunit DP2
[A] Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c)METPE02151  UniProtKB/TrEMBL B8GE46  DNA polymerase II, large subunit DP2
[A] Methanospirillum hungatei (strain JF-1 / DSM 864)METHJ02308  UniProtKB/Swiss-Prot DP2L_METHJ  DNA polymerase II, large subunit DP2
[A] Methanosaeta thermophila (strain DSM 6194 / PT)METTP01216  UniProtKB/Swiss-Prot DP2L_METTP  DNA polymerase II, large subunit DP2 KEGG: mbu:Mbur_2423 DNA polymerase II, large subunit DP2 TIGRFAM: DNA polymerase II, large subunit DP2 PFAM: DNA polymerase II large subunit DP2
[A] Methanococcoides burtonii (strain DSM 6242)METBU02219   ABE53274.1  DNA polymerase II, large subunit DP2
[A] Methanosarcina acetivoransMETAC04360  UniProtKB/Swiss-Prot DP2L_METAC  DNA polymerase II large subunit
[A] Methanosarcina barkeri (strain Fusaro / DSM 804)METBF00870  UniProtKB/Swiss-Prot DP2L_METBF  DNA-directed DNA polymerase, subunit 2
[A] Methanosarcina mazeiMETMA01227  UniProtKB/Swiss-Prot DP2L_METMA  DNA polymerase II large subunit
[A] Methanopyrus kandleriMETKA01649  UniProtKB/Swiss-Prot DP2L_METKA  DNA polymerase II large subunit
[A] Pyrococcus abyssiPYRAB00120  UniProtKB/Swiss-Prot DP2L_PYRAB  DNA polymerase II large subunit
[A] Pyrococcus furiosusPYRFU00018  UniProtKB/Swiss-Prot DP2L_PYRFU  DNA polymerase II large subunit
[A] Pyrococcus horikoshiiPYRHO00128  UniProtKB/Swiss-Prot DP2L_PYRHO  DNA polymerase II large subunit
[A] Picrophilus torridusPICTO00558  UniProtKB/Swiss-Prot DP2L_PICTO  DNA polymerase II large subunit
[A] Thermoplasma acidophilumTHEAC00036  UniProtKB/Swiss-Prot DP2L_THEAC  DNA polymerase II large subunit
[A] Thermoplasma volcaniumTHEVO00035  UniProtKB/Swiss-Prot DP2L_THEVO  DNA polymerase II large subunit
[A] Uncultured methanogenic archaeon RC-IUNCMA01934  UniProtKB/Swiss-Prot DP2L_UNCMA  DNA-directed DNA polymerase D, large subunit
[A] Korarchaeum cryptofilum (strain OPF8)KORCO01513  UniProtKB/TrEMBL B1L744  DNA polymerase II, large subunit DP2
[A] Nanoarchaeum equitansNANEQ00409  UniProtKB/Swiss-Prot DP2L_NANEQ  DNA polymerase II large subunit