List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 233628

e 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : e
This group has 21 members: 3 [E]ukaryota 18 [B]acteria
Fingerprint: MLFTEQD

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[E] Helobdella robustaHELRO10362   124434  jgi|Helro1|124434
[E] Lottia giganteaLOTGI19131   218771  jgi|Lotgi1|218771|estExt_Genewise1Plus.C_sca_480259
[E] Nematostella vectensisNEMVE14447  UniProtKB/TrEMBL A7RNR7  jgi|Nemve1|180263|estExt_GenewiseH_1.C_170367
[B] Mesorhizobium sp. (strain BNC1)MESSB04391  UniProtKB/TrEMBL Q11AT8  Xylose isomerase-like TIM barrel PFAM: Xylose isomerase-like TIM barrel KEGG: sme:SMb20680 putative hydroxypyruvate isomerase protein
[B] Rhizobium leguminosarum bv. viciae (strain 3841)RHIL303791  UniProtKB/TrEMBL Q1MCP1  putative hydroxypyruvate isomerase similarity:fasta; with=UniProt:HYI_ECOLI (EMBL:ECGCL); Escherichia coli.; hyi; Hydroxypyruvate isomerase (EC 5.3.1.22).; length=258; id 49.412; 255 aa overlap; query 3-257; subject 3-257 similarity:fasta; with=UniProt:Q98N83_RHILO (EMBL:BA000012); Rhizobium loti (Mesorhizobium loti).; Mlr0252 protein.; length=265; id 56.439; 264 aa overlap; query 1-264; subject 1-264
[B] Sinorhizobium medicae (strain WSM419)SINMW05410  UniProtKB/TrEMBL A6UKX8  Hydroxypyruvate isomerase
[B] Granulobacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1)GRABC00973  UniProtKB/TrEMBL Q0BTI1  Hydroxypyruvate isomerase
[B] Escherichia coli (strain SMS-3-5 / SECEC)ECOSM04634  UniProtKB/TrEMBL B1LDS4  Hydroxypyruvate isomerase Gcxl
[B] Escherichia coli (strain UTI89 / UPEC)ECOUT04906  UniProtKB/TrEMBL Q1R2I0  putative regulatory protein GclR
[B] Escherichia coli O1:K1 / APECECOK104330  UniProtKB/TrEMBL A1AJK1  putative regulatory protein GclR
[B] Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573)ALCBS01231  UniProtKB/TrEMBL Q0VQ67  Hydroxypyruvate isomerase
[B] Acinetobacter sp. (strain ADP1)ACIAD02771  UniProtKB/TrEMBL Q6F841  Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme hydroxypyruvate isomerase
[B] Pseudomonas entomophila (strain L48)PSEE401520  UniProtKB/TrEMBL Q1ICU1  hydroxypyruvate isomerase Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme
[B] Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)PSEF501674  UniProtKB/TrEMBL Q4KG07  identified by similarity to SP:P30147 hydroxypyruvate isomerase, putative
[B] Pseudomonas fluorescens (strain PfO-1)PSEPF01590  UniProtKB/TrEMBL Q3KFW6  Hydroxypyruvate isomerase
[B] Pseudomonas putida (strain F1 / ATCC 700007)PSEP101546  UniProtKB/TrEMBL A5W0R7  Hydroxypyruvate isomerase
[B] Pseudomonas putida (strain GB-1)PSEPG03826  UniProtKB/TrEMBL B0KPZ8  hydroxypyruvate isomerase unknown EC_number=5.3.1.22 KEGG: pen:PSEEN1671 hydroxypyruvate isomerase TIGRFAM: hydroxypyruvate isomerase PFAM: Xylose isomerase domain protein TIM barrel
[B] Pseudomonas putida (strain KT2440)PSEPK04215  UniProtKB/TrEMBL Q88F02  similar to GB:J03799, GB:X15005, GB:S37431, GB:M14199, GB:X61156, GB:U36484, SP:P08865, PID:1125065, PID:34272, and PID:386857; identified by sequence similarity; putative hydroxypyruvate isomerase
[B] Pseudomonas putida (strain W619)PSEPW03597  UniProtKB/TrEMBL B1JC29  Hydroxypyruvate isomerase
[B] Pseudomonas stutzeri (strain A1501)PSEU503017  UniProtKB/TrEMBL A4VP52  Hydroxypyruvate isomerase
[B] Photobacterium profundumPHOPR02119  UniProtKB/TrEMBL Q6LPW6  putative hydroxypyruvate isomerase