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OMA

Keyword Protein Sequence Group Entry

OMA Group 28200

DNA polymerase III
This group has 101 members: 101 [B]acteria
Fingerprint: MGFYSPD

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Mycobacterium abscessus (strain ATCC 19977 / DSM 44196)MYCA903672  UniProtKB/TrEMBL B1MG32  Error-prone DNA polymerase
[B] Mycobacterium avium (strain 104)MYCA104086  UniProtKB/TrEMBL A0QKN3  DNA polymerase III, alpha subunit, putative identified by match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594
[B] Mycobacterium paratuberculosisMYCPA03443  UniProtKB/Swiss-Prot DNAE2_MYCPA  DnaE2
[B] Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)MYCS201513  UniProtKB/TrEMBL A0QSX1  DNA polymerase III, alpha subunit, putative
[B] Mycobacterium sp. (strain JLS)MYCSJ01197  UniProtKB/TrEMBL A3PVT6  DNA polymerase III, alpha subunit KEGG: mmc:Mmcs_1183 DNA polymerase III, alpha subunit TIGRFAM: DNA polymerase III, alpha subunit PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type SMART: phosphoesterase PHP domain protein
[B] Mycobacterium sp. (strain KMS)MYCSK01187  UniProtKB/TrEMBL A1UC54  DNA polymerase III, alpha subunit KEGG: mmc:Mmcs_1183 DNA polymerase III, alpha subunit TIGRFAM: DNA polymerase III, alpha subunit PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type SMART: phosphoesterase PHP domain protein
[B] Mycobacterium sp. (strain MCS)MYCSS01166  UniProtKB/TrEMBL Q1BCT9  DNA polymerase III, alpha subunit
[B] Mycobacterium bovisMYCBO03394   NP_857046.1  Mb3405c, dnaE2, len: 1079 aa. Equivalent to Rv3370c, len: 1079 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 1079 aa overlap). Probable dnaE2, DNA polymerase III, alpha chain (EC 2.7.7.7), similar to many e.g. BAB51086|MLR4428 from Rhizobium loti (Mesorhizobium loti) (1118 aa), FASTA scores: opt: 1103, E(): 8.9e-59, (37.65% identity in 1075 aa overlap); Q9S291|SCI11.28c from Streptomyces coelicolor (1185 aa), FASTA scores: opt: 937, E(): 1e-48, (33.4% identity in 1090 aa overlap); O67125|DP3A_AQUAE|DNAE|AQ_1008 from Aquifex aeolicus (1161 aa), FASTA scores: opt: 895, E(): 3.4e-46, (29.9% identity in 1071 aa overlap); O51526|DP3A_BORBU from Borrelia burgdorferi (Lyme disease spirochete) (1147 aa), FASTA scores: opt: 835, E(): 1.4e-42, (30.05% identity in 888 aa overlap); etc. Equivalent to AAK47817 from Mycobacterium tuberculosis strain CDC1551 (1098 aa) but shorter 19 aa. Also similar to Mycobacterium tuberculosis DP3A_MYCTU|MTCY48.18c (29.6% identity in 1110 aa overlap). BELONGS TO DNA POLYMERASE TYPE-C FAMILY, DNAE SUBFAMILY. PROBABLE DNA POLYMERASE III (ALPHA CHAIN) DNAE2 (DNA NUCLEOTIDYLTRANSFERASE)
[B] Mycobacterium bovis (strain BCG / Paris 1173P2)MYCBP03383  UniProtKB/TrEMBL A1KP63  Probable dna polymerase III (Alpha chain) dnaE2
[B] Mycobacterium tuberculosisMYCTU04482  UniProtKB/Swiss-Prot DNAE2_MYCTU  Error-prone DNA polymerase
[B] Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra)MYCTA03435  UniProtKB/TrEMBL A5U844  DNA polymerase III subunit alpha DnaE2
[B] Mycobacterium tuberculosis (strain F11)MYCTF03307  UniProtKB/TrEMBL A5WSU2  DNA polymerase III (alpha chain) dnaE2 (DNA nucleotidyltransferase) Mapped to H37Rv Rv3370c
[B] Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1)MYCVP01469  UniProtKB/TrEMBL A1T5B1  DNA polymerase III, alpha subunit KEGG: mmc:Mmcs_1183 DNA polymerase III, alpha subunit TIGRFAM: DNA polymerase III, alpha subunit PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type SMART: phosphoesterase PHP domain protein
[B] Nocardia farcinicaNOCFA00918  UniProtKB/Swiss-Prot DNAE2_NOCFA  putative DNA polymerase III alpha subunit
[B] Rhodococcus opacus (strain B4)RHOOB06281  UniProtKB/TrEMBL C1B138  Error-prone DNA polymerase
[B] Rhodococcus sp. (strain RHA1)RHOSR06139  UniProtKB/TrEMBL Q0S382  DNA-directed DNA polymerase alpha subunit
[B] Acidothermus cellulolyticus (strain ATCC 43068 / 11B)ACIC100992  UniProtKB/TrEMBL A0LTK8  DNA polymerase III, alpha subunit KEGG: mpa:MAP3476c DNA polymerase III, alpha subunit, putative TIGRFAM: DNA polymerase III, alpha subunit PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type SMART: phosphoesterase PHP domain protein
[B] Salinispora arenicola (strain CNS-205)SALAI03315  UniProtKB/TrEMBL A8LY60  DNA polymerase III, alpha subunit
[B] Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440)SALTO03177  UniProtKB/TrEMBL A4X9U2  DNA polymerase III, alpha subunit
[B] Nocardioides sp. (strain BAA-499 / JS614)NOCSJ01846  UniProtKB/TrEMBL A1SHX2  DNA polymerase III, alpha subunit
[B] Propionibacterium acnesPROAC01619  UniProtKB/Swiss-Prot DNAE2_PROAC  DNA polymerase III, alpha chain
[B] Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906)METSB01054  UniProtKB/TrEMBL B8ELP6  DNA polymerase III, alpha subunit
[B] Bradyrhizobium japonicumBRAJA02978  UniProtKB/Swiss-Prot DNAE2_BRAJA  Error-prone DNA polymerase
[B] Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)BRASB02781  UniProtKB/TrEMBL A5EG17  Error-prone DNA polymerase
[B] Rhodopseudomonas palustrisRHOPA01796  UniProtKB/Swiss-Prot DNAE2_RHOPA  putative DNA polymerase III alpha chain
[B] Rhodopseudomonas palustris (strain BisA53)RHOP501801  UniProtKB/Swiss-Prot DNAE2_RHOP5  DNA polymerase III, alpha subunit KEGG: rpb:RPB_3563 DNA polymerase III, alpha subunit TIGRFAM: DNA polymerase III, alpha subunit PFAM: nucleic acid binding, OB-fold, tRNA/helicase-type SMART: phosphoesterase PHP domain protein
[B] Rhodopseudomonas palustris (strain BisB5)RHOPS01894  UniProtKB/Swiss-Prot DNAE2_RHOPS  DNA polymerase III, alpha subunit
[B] Rhodopseudomonas palustris (strain HaA2)RHOP203544  UniProtKB/Swiss-Prot DNAE2_RHOP2  DNA polymerase III, alpha subunit
[B] Rhodopseudomonas palustris (strain TIE-1)RHOPT01964  UniProtKB/TrEMBL B3QAJ2  DNA polymerase III, alpha subunit
[B] Brucella abortusBRUAB00064  UniProtKB/Swiss-Prot DNAE2_BRUAB  similar to BR0069, DNA polymerase III, alpha subunit DnaE-1, DNA polymerase III, alpha subunit
[B] Brucella abortus (strain 2308)BRUA200066  UniProtKB/TrEMBL Q2YPR3  Immunoglobulin/major histocompatibility complex:Phosphoesterase PHP, N-terminal:DNA polymerase III alpha subunit
[B] Brucella abortus (strain S19)BRUA100061  UniProtKB/TrEMBL B2S7W9  DNA polymerase III subunit alpha
[B] Brucella melitensisBRUME01863  UniProtKB/Swiss-Prot DNAE2_BRUME  Error-prone DNA polymerase
[B] Brucella suisBRUSU00068  UniProtKB/Swiss-Prot DNAE2_BRUSU  similar to SP:P33553, GB:Z12295, PID:1122400, PID:41062, PID:847971, and PID:1314251; identified by sequence similarity; putative DNA polymerase III, alpha subunit
[B] Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966)PARL102462  UniProtKB/TrEMBL A7HW57  DNA polymerase III, alpha subunit precursor
[B] Hyphomonas neptunium (strain ATCC 15444)HYPNA02423  UniProtKB/TrEMBL Q0BZD2  Putative DNA polymerase III, alpha subunit
[B] Maricaulis maris (strain MCS10)MARMM01825  UniProtKB/TrEMBL Q0ANL4  DNA polymerase III, alpha subunit
[B] Paracoccus denitrificans (strain Pd 1222)PARDP04177  UniProtKB/TrEMBL A1BA11  DNA polymerase III, alpha subunit KEGG: jan:Jann_1558 DNA polymerase III, alpha subunit TIGRFAM: DNA polymerase III, alpha subunit PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type SMART: phosphoesterase PHP domain protein
[B] Silicibacter pomeroyiSILPO00650  UniProtKB/Swiss-Prot DNAE2_SILPO  DNA polymerase III, alpha subunit, putative
[B] Erythrobacter litoralis (strain HTCC2594)ERYLH01072  UniProtKB/TrEMBL Q2NAX1  DNA polymerase III alpha chain COG0587 DNA polymerase III, alpha subunit
[B] Bordetella bronchisepticaBORBR03072  UniProtKB/Swiss-Prot DNAE2_BORBR  ortholog of Bordetella pertussis (BX470248) BP2208 putative DNA polymerase III alpha chain
[B] Bordetella parapertussisBORPA01628  UniProtKB/Swiss-Prot DNAE2_BORPA  ortholog of Bordetella pertussis (BX470248) BP2208 putative DNA polymerase III alpha chain
[B] Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448)BORPD02553  UniProtKB/TrEMBL A9IPK0  DNA polymerase III, alpha subunit
[B] Burkholderia cenocepacia (strain AU 1054)BURCA02190  UniProtKB/TrEMBL Q1BTE1  DNA polymerase III, alpha subunit
[B] Burkholderia cenocepacia (strain MC0-3)BURCC02809  UniProtKB/TrEMBL B1JYS3  DNA polymerase III, alpha subunit
[B] Burkholderia cepacia (strain ATCC 53795 / AMMD)BURCM02872  UniProtKB/TrEMBL Q0BBN1  DNA polymerase III, alpha subunit KEGG: bur:Bcep18194_A6156 DNA polymerase III subunit alpha TIGRFAM: DNA polymerase III, alpha subunit PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type SMART: phosphoesterase PHP domain protein
[B] Burkholderia sp. (strain 383)BURS302963  UniProtKB/TrEMBL Q39CR6  DNA polymerase III, alpha subunit
[B] Burkholderia malleiBURMA02628  UniProtKB/Swiss-Prot DNAE2_BURMA  Error-prone DNA polymerase
[B] Burkholderia mallei (strain NCTC 10229)BURM901395  UniProtKB/TrEMBL A2S688  DNA polymerase III, alpha subunit, form 2
[B] Burkholderia mallei (strain NCTC 10247)BURM702712  UniProtKB/TrEMBL A3MQ87  DNA polymerase III, alpha subunit
[B] Burkholderia mallei (strain SAVP1)BURMS00093  UniProtKB/TrEMBL A1UZR2  DNA polymerase III, alpha subunit, form 2
[B] Burkholderia phymatum (strain DSM 17167 / STM815)BURP801951  UniProtKB/TrEMBL B2JDI9  DNA polymerase III, alpha subunit
[B] Burkholderia pseudomalleiBURPS00471  UniProtKB/Swiss-Prot DNAE2_BURPS  Similar to Escherichia coli DNA polymerase III alpha subunit DnaE or PolC SWALL:DP3A_ECOLI (SWALL:P10443) (1160 aa) fasta scores: E(): 2.9e-58, 29.63% id in 1080 aa, and to Ralstonia solanacearum probable DNA polymerase III rsp0800 or rs01907 SWALL:Q8XRN1 (EMBL:AL646080) (1075 aa) fasta scores: E(): 0, 57.71% id in 1076 aa putative DNA polymerase III alpha subunit
[B] Burkholderia pseudomallei (strain 1106a)BURP000520  UniProtKB/TrEMBL A3NR39  DNA polymerase III, alpha subunit
[B] Burkholderia pseudomallei (strain 1710b)BURP100678  UniProtKB/TrEMBL Q3JWE7  DNA polymerase III, alpha subunit, form 2 identified by match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594
[B] Burkholderia pseudomallei (strain 668)BURP600507  UniProtKB/TrEMBL A3N5E2  DNA polymerase III, alpha subunit
[B] Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301)BURTA00437  UniProtKB/TrEMBL Q2T1E6  DNA polymerase III, alpha subunit superfamily identified by match to protein family HMM PF02231; match to protein family HMM PF07733; match to protein family HMM TIGR00594
[B] Acidovorax sp. (strain JS42)ACISJ01817  UniProtKB/TrEMBL A1W7C2  DNA polymerase III, alpha subunit KEGG: rfr:Rfer_1227 DNA polymerase III, alpha subunit TIGRFAM: DNA polymerase III, alpha subunit PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type SMART: phosphoesterase PHP domain protein
[B] Delftia acidovorans (strain DSM 14801 / SPH-1)DELAS04171  UniProtKB/TrEMBL A9BLV3  DNA polymerase III, alpha subunit
[B] Diaphorobacter sp. (strain TPSY)DIAST01722  UniProtKB/TrEMBL B9MJ86  DNA polymerase III, alpha subunit
[B] Polaromonas naphthalenivorans (strain CJ2)POLNA04581  UniProtKB/TrEMBL A1VWD2  DNA polymerase III, alpha subunit
[B] Polaromonas sp. (strain JS666 / ATCC BAA-500)POLSJ02335  UniProtKB/TrEMBL Q12AY3  DNA polymerase III, alpha subunit
[B] Methylibium petroleiphilum (strain PM1)METPP04327  UniProtKB/TrEMBL A2SP94  DNA-directed DNA polymerase
[B] Azoarcus sp. (strain EbN1)AZOSE01688  UniProtKB/Swiss-Prot DNAE2_AZOSE  similar to DNA polymerase III alpha chain
[B] Dechloromonas aromatica (strain RCB)DECAR01910  UniProtKB/Swiss-Prot DNAE2_DECAR  DNA polymerase III, alpha subunit
[B] Anaeromyxobacter sp. (strain Fw109-5)ANADF02177  UniProtKB/TrEMBL A7HCF6  DNA polymerase III, alpha subunit
[B] Myxococcus xanthus (strain DK 1622)MYXXD03817  UniProtKB/TrEMBL Q1D5B1  DNA polymerase III, alpha subunit identified by similarity to SP:O34623; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594
[B] Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455)ACIF201752  UniProtKB/TrEMBL B7JBX3  DNA polymerase III, alpha subunit, putative
[B] Acidithiobacillus ferrooxidans (strain ATCC 53993)ACIF501463  UniProtKB/TrEMBL B5EJ94  DNA polymerase III, alpha subunit
[B] Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8)MARAV00920  UniProtKB/TrEMBL A1TZA0  DNA polymerase III, alpha subunit KEGG: mca:MCA2164 DNA polymerase III, alpha subunit, putative TIGRFAM: DNA polymerase III, alpha subunit PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type SMART: phosphoesterase PHP domain protein
[B] Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024)SACD201020  UniProtKB/Swiss-Prot DNAE2_SACD2  Pantoate-beta-alanine ligase
[B] Idiomarina loihiensisIDILO02534  UniProtKB/Swiss-Prot DNAE2_IDILO  DNA polymerase III alpha subunit
[B] Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)SHEAM01852  UniProtKB/TrEMBL A1S6R2  DNA-directed DNA polymerase KEGG: vpa:VP2036 putative DNA polymerase III alpha chain
[B] Shewanella loihica (strain BAA-1088 / PV-4)SHELP02090  UniProtKB/TrEMBL A3QER8  DNA polymerase III, alpha subunit KEGG: ilo:IL2566 DNA polymerase III alpha subunit TIGRFAM: DNA polymerase III, alpha subunit PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type SMART: phosphoesterase PHP domain protein
[B] Shewanella piezotolerans (strain WP3 / JCM 13877)SHEPW02203  UniProtKB/TrEMBL B8CNV1  DNA polymerase III alpha subunit
[B] Pseudomonas aeruginosaPSEAE00669  UniProtKB/Swiss-Prot DNAE2_PSEAE  Error-prone DNA polymerase
[B] Pseudomonas aeruginosa (strain LESB58)PSEA804633  UniProtKB/TrEMBL B7UZ59  Probable DNA polymerase alpha chain
[B] Pseudomonas aeruginosa (strain PA7)PSEA704752  UniProtKB/Swiss-Prot DNAE2_PSEA7  Error-prone DNA polymerase
[B] Pseudomonas aeruginosa (strain UCBPP-PA14)PSEAB04464  UniProtKB/TrEMBL Q02HG1  conserved hypothetical protein
[B] Pseudomonas entomophila (strain L48)PSEE402220  UniProtKB/TrEMBL Q1IAU4  probable DNA polymerase III, alpha subunit Evidence 2b : Function of strongly homologous gene; Product type e : enzyme
[B] Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)PSEF503646  UniProtKB/Swiss-Prot DNAE2_PSEF5  identified by match to protein family HMM PF01336; match to protein family HMM PF02231; match to protein family HMM PF07733; match to protein family HMM TIGR00594 DNA polymerase III, alpha subunit, putative
[B] Pseudomonas fluorescens (strain PfO-1)PSEPF03137  UniProtKB/Swiss-Prot DNAE2_PSEPF  DNA polymerase III, alpha subunit
[B] Pseudomonas mendocina (strain ymp)PSEMY01903  UniProtKB/Swiss-Prot DNAE2_PSEMY  Error-prone DNA polymerase
[B] Pseudomonas putida (strain F1 / ATCC 700007)PSEP102551  UniProtKB/TrEMBL A5W3M3  DNA polymerase III, alpha subunit
[B] Pseudomonas putida (strain GB-1)PSEPG02711  UniProtKB/TrEMBL B0KTE8  DNA polymerase III, alpha subunit unknown EC_number=2.7.7.7 KEGG: pen:PSEEN2415 probable DNA polymerase III, alpha subunit TIGRFAM: DNA polymerase III, alpha subunit PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit SMART: phosphoesterase PHP domain protein
[B] Pseudomonas putida (strain KT2440)PSEPK03079  UniProtKB/Swiss-Prot DNAE2_PSEPK  similar to GP:9946548; identified by sequence similarity; putative DNA polymerase III, alpha subunit, putative
[B] Pseudomonas putida (strain W619)PSEPW02421  UniProtKB/TrEMBL B1J826  DNA polymerase III, alpha subunit
[B] Pseudomonas syringae (pv. tomato)PSESM02660  UniProtKB/Swiss-Prot DNAE2_PSESM  DNA polymerase III, alpha subunit, putative
[B] Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6)PSE1402496  UniProtKB/Swiss-Prot DNAE2_PSE14  identified by match to protein family HMM PF01336; match to protein family HMM PF02231; match to protein family HMM PF07733; match to protein family HMM TIGR00594 DNA polymerase III, alpha subunit, putative
[B] Pseudomonas syringae pv. syringae (strain B728a)PSEU202508  UniProtKB/Swiss-Prot DNAE2_PSEU2  DNA polymerase III alpha subunit
[B] Vibrio harveyi (strain ATCC BAA-1116 / BB120)VIBHB02522  UniProtKB/Swiss-Prot DNAE2_VIBHB  Putative uncharacterized protein
[B] Vibrio vulnificusVIBVU02715  UniProtKB/Swiss-Prot DNAE2_VIBVU  COG0587 DNA polymerase III, alpha subunit
[B] Vibrio vulnificus (strain YJ016)VIBVY01288  UniProtKB/Swiss-Prot DNAE2_VIBVY  Error-prone DNA polymerase
[B] Xanthomonas axonopodis (pv. citri)XANAC01163   NP_641535.1  identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark DNA polymerase III alpha chain
[B] Xanthomonas campestris pv. campestrisXANCP01071  UniProtKB/Swiss-Prot DNAE2_XANCP  Error-prone DNA polymerase
[B] Xanthomonas campestris pv. campestris (strain 8004)XANC803049   AAY50192.1  DNA polymerase III alpha chain
[B] Xanthomonas campestris pv. campestris (strain B100)XANCB03226  UniProtKB/Swiss-Prot DNAE2_XANCB  DnaE1 protein
[B] Xanthomonas campestris pv. vesicatoria (strain 85-10)XANC501199  UniProtKB/Swiss-Prot DNAE2_XANC5  DNA polymerase III alpha chain protein
[B] Xanthomonas oryzae (pv. oryzae)XANOR03079  UniProtKB/Swiss-Prot DNAE2_XANOR  identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark DNA polymerase III alpha chain
[B] Xanthomonas oryzae pv. oryzae (strain MAFF 311018)XANOM02971  UniProtKB/TrEMBL Q2P0D3  DNA polymerase III alpha chain identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker
[B] Xanthomonas oryzae pv. oryzae (strain PXO99A)XANOP03229  UniProtKB/Swiss-Prot DNAE2_XANOP  Error-prone DNA polymerase