List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 268940

unknown
This group has 5 members: 5 [E]ukaryota
Fingerprint: MEMPART

Protein List | Alignment | Close Groups | Phyletic Profile Download: download fasta, download darwin

[E] Oryza sativaORYSA11763   BAF15557.1  Protein of unknown function DUF604 family protein contains InterPro domain(s): IPR006740 supported by AK072395
[E] Sorghum bicolorSORBI07147   4762004  jgi|Sorbi1|4762004|estExt_Genewise1.C_chr_67137
[E] Populus trichocarpaPOPTR12489  UniProtKB/TrEMBL B9GWU6  jgi|Poptr1_1|554403|eugene3.00031036 [DNA did not match protein] [DNA partly invalid]
[E] Arabidopsis thalianaARATH18580  UniProtKB/TrEMBL Q8H0S2  fringe-related protein, + weak similarity to Fringe (Schistocerca gregaria)(GI:6573138);Fringe encodes an extracellular protein that regulates Notch signalling; go_function: transferase activity, transferring glycosyl groups [goid GO:0005575@[ND]; GO:0008150@[ND]; GO:0016757@[ISS]] [evidence ISS]; go_process: biological process unknown [goid GO:0000004] [evidence ND] transferase, transferring glycosyl groups
[E] Vitis viniferaVITVI10412  UniProtKB/TrEMBL A7QNK1