List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 183012

DNA topoisomerase I
This group has 24 members: 24 [B]acteria
Fingerprint: IERNIRH

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)RUBXD01922  UniProtKB/TrEMBL Q1AUL7  DNA topoisomerase I KEGG: mba:Mbar_A2410 DNA topoisomerase I TIGRFAM: DNA topoisomerase I PFAM: TOPRIM DNA topoisomerase, type IA, central DNA topoisomerase, type IA, zn finger SMART: DNA topoisomerase, type IA, domain 2 DNA topoisomerase, type IA, DNA-binding Toprim subdomain
[B] Sulfurihydrogenibium sp. (strain YO3AOP1)SULSY00347  UniProtKB/TrEMBL B2V7T0  DNA topoisomerase I
[B] Roseiflexus castenholzii (strain DSM 13941 / HLO8)ROSCS01638  UniProtKB/TrEMBL A7NJW2  DNA topoisomerase I KEGG: rrs:RoseRS_1430 DNA topoisomerase I TIGRFAM: DNA topoisomerase I PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; DNA topoisomerase type IA zn finger domain protein SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein
[B] Roseiflexus sp. (strain RS-1)ROSS101373  UniProtKB/TrEMBL A5UT75  DNA topoisomerase I
[B] Listeria innocuaLISIN01311  UniProtKB/TrEMBL Q92C77  highly similar to DNA topoisomerase I TopA
[B] Desulforudis audaxviator (strain MP104C)DESAP00553  UniProtKB/TrEMBL B1I255  DNA topoisomerase I
[B] Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E)THEP301206  UniProtKB/TrEMBL B0K9V5  DNA topoisomerase I
[B] Thermoanaerobacter tengcongensisTHETN01321  UniProtKB/TrEMBL Q8R9Y1  Best Blastp hit = gi|730965|sp|P39814|TOP1_BACSU DNA TOPOISOMERASE I (OMEGA-PROTEIN) (RELAXING ENZYME) (UNTWISTING ENZYME) (SWIVELASE) gi|7449002|pir||G69724 DNA topoisomerase I topA - Bacillus subtilis gi|520753|gb|AAA22763.1| (L27797) DNA topoisomerase I [Bacillus subtilis] gi|2462970|emb|CAA04422.1| (AJ000975) DNA Topoisomerase I [Bacillus subtilis] gi|2633984|emb|CAB13485.1| (Z99112) DNA topoisomerase I [Bacillus subtilis], score 773, E-value 0 Topoisomerase IA
[B] Leuconostoc citreum (strain KM20)LEUCK00727  UniProtKB/TrEMBL B1MYG2  DNA topoisomerase I
[B] Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288)STRGC01162  UniProtKB/TrEMBL A8AXH4  DNA topoisomerase I
[B] Streptococcus sanguinis (strain SK36)STRSV01117  UniProtKB/TrEMBL A3CN34  DNA topoisomerase I, putative
[B] Streptococcus suis (strain 05ZYH33)STRSY00974  UniProtKB/TrEMBL A4VV12  DNA topoisomerase I
[B] Neisseria meningitidis serogroup C (strain 053442)NEIM001910  UniProtKB/TrEMBL A9M455  DNA topoisomerase I Code: L; COG: COG0550
[B] Coxiella burnetiiCOXBU01894  UniProtKB/TrEMBL Q83AA5  identified by match to PFAM protein family HMM PF03119 DNA topoisomerase I
[B] Coxiella burnetii (strain CbuG_Q212)COXB201746  UniProtKB/TrEMBL B6J3C5  DNA topoisomerase I
[B] Coxiella burnetii (strain Dugway 5J108-111)COXBN01953  UniProtKB/TrEMBL A9KH18  DNA topoisomerase I
[B] Coxiella burnetii (strain RSA 331 / Henzerling II)COXBR00075  UniProtKB/TrEMBL A9N9H1  DNA topoisomerase I
[B] Methylococcus capsulatusMETCA02663  UniProtKB/TrEMBL Q603G7  identified by similarity to SP:P39814; match to protein family HMM PF01131; match to protein family HMM PF01396; match to protein family HMM PF01751; match to protein family HMM TIGR01051 DNA topoisomerase I
[B] Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris)LEPBP01132  UniProtKB/TrEMBL B0SNJ8  DNA topoisomerase I
[B] Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames)LEPBA01098  UniProtKB/TrEMBL B0SF59  DNA topoisomerase
[B] Mycoplasma hyopneumoniae (strain 232)MYCH200095  UniProtKB/TrEMBL Q601V4  DNA topoisomerase I (omega-protein)
[B] Mycoplasma hyopneumoniae (strain 7448)MYCH700277   AAZ53657.1  identified by sequence similarity; putative; ORF located using Blastx; COG0550 DNA topoisomerase I
[B] Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110)MYCHJ00272   AAZ44366.1  identified by sequence similarity; putative; ORF located using Blastx; COG0550 DNA topoisomerase I
[B] Mycoplasma synoviae (strain 53)MYCS500514  UniProtKB/TrEMBL Q4A5N2  identified by sequence similarity; putative; ORF located using Blastx; COG0550 DNA topoisomerase I