List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 303919

alpha-amylase
This group has 45 members: 34 [A]rchaea 11 [B]acteria
Fingerprint: MDYETFG

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[A] Desulfurococcus kamchatkensis (strain 1221n / DSM 18924)DESK100347  UniProtKB/TrEMBL B8D3J5  Alpha-amylase
[A] Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1)STAMF01366  UniProtKB/TrEMBL A3DPC0  Glycoside hydrolase, family 57
[A] Metallosphaera sedula (strain ATCC 51363 / DSM 5348)METS501399  UniProtKB/TrEMBL A4YGM4  Alpha-amylase
[A] Sulfolobus acidocaldariusSULAC01112  UniProtKB/TrEMBL Q4J9I4  Sso0988 alpha-amylase ortholog Sto0817 alpha-amylase orthologue alpha-amylase
[A] Sulfolobus islandicus (strain L.S.2.15 / Lassen #1)SULIL01164  UniProtKB/TrEMBL C3MPL8  
[A] Sulfolobus islandicus (strain M.14.25 / Kamchatka #1)SULIM01088  UniProtKB/TrEMBL C3MYL0  
[A] Sulfolobus islandicus (strain M.16.27)SULIA01135  UniProtKB/TrEMBL C3N595  
[A] Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1)SULIY01174  UniProtKB/TrEMBL C3NDU9  
[A] Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2)SULIN01497  UniProtKB/TrEMBL C3NHV4  
[A] Sulfolobus solfataricusSULSO00893  UniProtKB/TrEMBL C5SUX1  Alpha amylase
[A] Sulfolobus tokodaiiSULTO00887  UniProtKB/TrEMBL Q973T0  hypothetical protein
[A] Thermofilum pendens (strain Hrk 5)THEPD00135  UniProtKB/TrEMBL A1RWG5  Alpha-amylase
[A] Caldivirga maquilingensis (strain DSMZ 13496 / IC-167)CALMQ00166  UniProtKB/TrEMBL A8MA88  Alpha-amylase
[A] Pyrobaculum aerophilumPYRAE02409  UniProtKB/TrEMBL Q8ZT57  Putative uncharacterized protein
[A] Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)PYRAR01810  UniProtKB/TrEMBL A4WM13  Alpha-amylase
[A] Pyrobaculum calidifontis (strain JCM 11548 / VA1)PYRCJ01024  UniProtKB/TrEMBL A3MUZ7  Alpha-amylase
[A] Pyrobaculum islandicum (strain DSM 4184 / JCM 9189)PYRIL00959  UniProtKB/TrEMBL A1RT63  Alpha-amylase
[A] Methanocaldococcus jannaschiiMETJA01656  UniProtKB/Swiss-Prot AMYA_METJA  Putative alpha-amylase
[A] Methanococcus maripaludisMETMP01291  UniProtKB/TrEMBL Q6LXQ8  Glycoside hydrolase, family 57
[A] Methanococcus maripaludis (strain C5 / ATCC BAA-1333)METM500300  UniProtKB/TrEMBL A4FWP3  Alpha-amylase
[A] Methanococcus maripaludis (strain C6 / ATCC BAA-1332)METM601369  UniProtKB/TrEMBL A9AA23  Alpha-amylase
[A] Methanococcus maripaludis (strain C7 / ATCC BAA-1331)METM700530  UniProtKB/TrEMBL A6VGM8  Alpha-amylase
[A] Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224)METVS00589  UniProtKB/TrEMBL A6UPT5  Alpha-amylase
[A] Methanoregula boonei (strain 6A8)METB601530  UniProtKB/TrEMBL A7I8J3  Alpha-amylase
[A] Methanospirillum hungatei (strain JF-1 / DSM 864)METHJ00779  UniProtKB/TrEMBL Q2FR74  Alpha-amylase
[A] Methanosaeta thermophila (strain DSM 6194 / PT)METTP00246  UniProtKB/TrEMBL A0B5S8  Alpha-amylase PFAM: glycoside hydrolase, family 57 KEGG: mbu:Mbur_0437 alpha-amylase
[A] Methanococcoides burtonii (strain DSM 6242)METBU00394  UniProtKB/TrEMBL Q12YQ1  Alpha-amylase
[A] Methanosarcina acetivoransMETAC03871  UniProtKB/TrEMBL Q8TIT9  Alpha-amylase
[A] Methanosarcina barkeri (strain Fusaro / DSM 804)METBF00518  UniProtKB/TrEMBL Q46F23  alpha-amylase
[A] Methanosarcina mazeiMETMA00850  UniProtKB/TrEMBL Q8PYJ9  Alpha-amylase
[A] Picrophilus torridusPICTO01240  UniProtKB/TrEMBL Q6KZM7  Alpha-amylase
[A] Thermoplasma acidophilumTHEAC00334  UniProtKB/TrEMBL Q9HL91  Alpha-amylase related protein
[A] Thermoplasma volcaniumTHEVO00431  UniProtKB/TrEMBL Q97BM4  Alpha-amylase
[A] Uncultured methanogenic archaeon RC-IUNCMA01598  UniProtKB/TrEMBL Q0W4T1  putative alpha-amylase
[B] Bacteroides fragilisBACFR01001  UniProtKB/TrEMBL Q64XM6  similar to gp:AE016944_161 [Bacteroides thetaiotaomicron VPI-5482], percent identity 90 in 462 aa, BLASTP E(): 0.0 putative alpha-amylase
[B] Bacteroides fragilis (strain ATCC 25285 / NCTC 9343)BACFN00882  UniProtKB/TrEMBL Q5LGS4  Similar to Bacteroides thetaiotaomicron putative alpha-amylase BT4305 SWALL:AAO79410 (EMBL:AE016944) (460 aa) fasta scores: E(): 3.9e-157, 90.04% id in 462 aa, and to Methanosarcina mazei alpha-amylase MM0862 SWALL:Q8PYJ9 (EMBL:AE013311) (398 aa) fasta scores: E(): 6.5e-45, 36.77% id in 397 aa, and to Methanosarcina acetivorans alpha-amylase ma4052 SWALL:Q8TIT9 (EMBL:AE011117) (396 aa) fasta scores: E(): 1.7e-44, 36.27% id in 397 aa putative glycosyl hydrolase
[B] Bacteroides thetaiotaomicronBACTN04259  UniProtKB/TrEMBL Q89ZS1  Putative alpha-amylase
[B] Azobacteroides pseudotrichonymphae genomovar. CFP2AZOPC00505  UniProtKB/TrEMBL B6YRE8  Alpha-amylase
[B] Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)PARD800197  UniProtKB/TrEMBL A6L8I3  Glycoside hydrolase family 57, candidate alpha- glycosidase
[B] Porphyromonas gingivalisPORGI01398  UniProtKB/TrEMBL Q7MU72  similar to GB:Z27512, GB:Z14073, SP:P01764, PID:483870, PID:495944, PID:495993, PID:495995, PID:496014, PID:511000, PID:553412, PID:553422, PID:553456, PID:553461, PID:553468, PID:587277, PID:587307, PID:587314, PID:587318, PID:619625, PID:642584, PID:790809, PID:896272, PID:896273, PID:903667, PID:903675, PID:905377, PID:976299, and PID:976311; identified by sequence similarity; putative conserved hypothetical protein
[B] Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257)PORG300399  UniProtKB/TrEMBL B2RHV1  Putative glycosyl hydrolase
[B] Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)CYTH300794  UniProtKB/TrEMBL Q11WX8  a-amylase, glycoside hydrolase family 57 protein
[B] Lawsonia intracellularis (strain PHE/MN1-00)LAWIP00331  UniProtKB/TrEMBL Q1MRI9  alpha-amylase
[B] Syntrophus aciditrophicus (strain SB)SYNAS00830  UniProtKB/TrEMBL Q2LRK8  alpha-amylase
[B] Akkermansia muciniphila (strain ATCC BAA-835)AKKM801834  UniProtKB/TrEMBL B2UN71  Glycoside hydrolase family 57