List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 234045

family 31
This group has 7 members: 7 [B]acteria
Fingerprint: MASKVED

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Listeria innocuaLISIN02512  UniProtKB/TrEMBL Q928J2  similar to glycosidase
[B] Listeria monocytogenesLISMO02442  UniProtKB/TrEMBL Q8Y4J2  similar to glycosidase
[B] Listeria monocytogenes (serotype 4b / strain F2365)LISMF02393  UniProtKB/TrEMBL Q71WY0  identified by match to protein family HMM PF01055; match to protein family HMM PF03422; match to protein family HMM TIGR01612 glycosyl hydrolase, family 31
[B] Listeria monocytogenes serotype 4a (strain HCC23)LISMH00149  UniProtKB/TrEMBL B8DDB0  Glycosyl hydrolase, family 31
[B] Listeria monocytogenes serotype 4b (strain Clip81459)LISMC02377  UniProtKB/TrEMBL C1KY85  Putative glycosidase
[B] Stenotrophomonas maltophilia (strain K279a)STRMK04155  UniProtKB/TrEMBL B2FLK6  Putative glycosyl hydrolase precursor
[B] Stenotrophomonas maltophilia (strain R551-3)STRM503795  UniProtKB/TrEMBL B4SM68  Glycoside hydrolase family 31