List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 234878

chorismate--pyruvate lyase
This group has 5 members: 5 [B]acteria
Fingerprint: LQITHTH

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240)AERHH00167  UniProtKB/Swiss-Prot UBIC_AERHH  chorismate--pyruvate lyase identified by match to protein family HMM PF04345
[B] Aeromonas salmonicida (strain A449)AERS403826  UniProtKB/Swiss-Prot UBIC_AERS4  Probable chorismate--pyruvate lyase
[B] Pseudoalteromonas haloplanktis (strain TAC 125)PSEHT02249  UniProtKB/Swiss-Prot UBIC_PSEHT  Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; PubMedId : 1644758, 1644192; Product type e : enzyme putative chorismate pyruvate lyase UbiC
[B] Ruthia magnifica subsp. Calyptogena magnificaRUTMC00838  UniProtKB/TrEMBL A1AXI5  Chorismate lyase
[B] Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA)VESOH00803  UniProtKB/TrEMBL A5CVT2  Chorismate--pyruvate lyase