| [E] Ciona intestinalis | CIOIN01851 | ENSCINP00000011951 | - |
| [E] Lottia gigantea | LOTGI04572 | 121844 | jgi|Lotgi1|121844|e_gw1.38.108.1 |
| [E] Drosophila melanogaster | DROME03874 | MET10_DROME | CG7544-PA |
| [E] Drosophila pseudoobscura | DROPS05799 | EAL25220 | |
| [E] Nematostella vectensis | NEMVE09424 | A7SK94 | jgi|Nemve1|121407|e_gw.179.7.1 |
| [E] Cryptosporidium parvum | CRYPV00741 | Q5CX92 | YbiN-like RNA methylase (NPPY variety; HemK family) |
| [B] Bacteroides fragilis | BACFR03064 | RLMF_BACFR | similar to gp:AE016946_76 [Bacteroides thetaiotaomicron VPI-5482], percent identity 77 in 305 aa, BLASTP E(): e-141 Hypothetical protein |
| [B] Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) | BACFN02831 | RLMF_BACFN | Similar to Pseudomonas aeruginosa hypothetical protein PA3840 SWALL:Q9HXG4 (EMBL:AE004801) (336 aa) fasta scores: E(): 2.5e-61, 52.25% id in 310 aa, and to Yersinia pestis hypothetical protein YPO2519 or Y1668 SWALL:Q8ZDP0 (EMBL:AJ414152) (336 aa) fasta scores: E(): 1.7e-59, 50.98% id in 304 aa conserved hypothetical protein |
| [B] Bacteroides thetaiotaomicron | BACTN04644 | RLMF_BACTN | Ribosomal RNA large subunit methyltransferase F |
| [B] Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) | FLAJ102164 | RLMF_FLAJ1 | Ribosomal RNA large subunit methyltransferase F |
| [B] Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) | FLAPJ01714 | RLMF_FLAPJ | Probable SAM-dependent methyltransferase |
| [B] Gramella forsetii (strain KT0803) | GRAFK02594 | RLMF_GRAFK | protein containing DUF890 |
| [B] Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) | CYTH300663 | RLMF_CYTH3 | SAM-dependent methyltransferase |
| [B] Methylobacillus flagellatus (strain KT / ATTC 51484 / DSM 6875) | METFK00165 | RLMF_METFK | protein of unknown function DUF890 |
| [B] Dechloromonas aromatica (strain RCB) | DECAR02824 | RLMF_DECAR | Protein of unknown function DUF890 |
| [B] Desulfotalea psychrophila | DESPS01289 | RLMF_DESPS | conserved hypothetical protein |
| [B] Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) | AERHH01273 | RLMF_AERHH | conserved hypothetical protein identified by match to protein family HMM PF05971 |
| [B] Aeromonas salmonicida (strain A449) | AERS401166 | RLMF_AERS4 | Hypothetical protein |
| [B] Alteromonas macleodii (strain DSM 17117 / Deep ecotype) | ALTMD02597 | B4RTD5 | Methyltransferase |
| [B] Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) | SACD200304 | RLMF_SACD2 | A/G-specific adenine glycosylase MutY |
| [B] Colwellia psychrerythraea (strain 34H / ATCC BAA-681) | COLP302181 | RLMF_COLP3 | identified by similarity to OMNI:VC1614; match to protein family HMM PF05971 conserved hypothetical protein |
| [B] Pseudoalteromonas atlantica (strain T6c / BAA-1087) | PSEA601568 | RLMF_PSEA6 | Hypothetical protein |
| [B] Pseudoalteromonas haloplanktis (strain TAC 125) | PSEHT03219 | CAI89337.1 | Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type e : enzyme putative S-adenosyl-L-methionine-dependent methyltransferase |
| [B] Psychromonas ingrahamii (strain 37) | PSYIN00574 | RLMF_PSYIN | hypothetical protein DUF890 PFAM: protein of unknown function DUF890 KEGG: dps:DP1289 hypothetical protein |
| [B] Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) | SHEAM03604 | RLMF_SHEAM | protein of unknown function DUF890 KEGG: sdn:Sden_0097 protein of unknown function DUF890 |
| [B] Shewanella baltica (strain OS155 / ATCC BAA-1091) | SHEB503896 | ABN63692.1 | Putative uncharacterized protein |
| [B] Shewanella baltica (strain OS185) | SHEB800125 | RLMF_SHEB8 | Putative uncharacterized protein |
| [B] Shewanella baltica (strain OS195) | SHEB900132 | RLMF_SHEB9 | PFAM: protein of unknown function DUF890 KEGG: shw:Sputw3181_3944 protein of unknown function DUF890 protein of unknown function DUF890 |
| [B] Shewanella baltica (strain OS223) | SHEB200126 | RLMF_SHEB2 | Putative uncharacterized protein |
| [B] Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) | SHEDO00096 | RLMF_SHEDO | Hypothetical protein |
| [B] Shewanella frigidimarina (strain NCIMB 400) | SHEFN00050 | RLMF_SHEFN | Hypothetical protein |
| [B] Shewanella halifaxensis (strain HAW-EB4) | SHEHH00096 | RLMF_SHEHH | Putative uncharacterized protein |
| [B] Shewanella loihica (strain BAA-1088 / PV-4) | SHELP03729 | RLMF_SHELP | protein of unknown function DUF890 PFAM: protein of unknown function DUF890 KEGG: she:Shewmr4_0128 protein of unknown function DUF890 |
| [B] Shewanella oneidensis | SHEON00133 | AAN53221.1 | Putative uncharacterized protein |
| [B] Shewanella pealeana (strain ANG-SQ1 / ATCC 700345) | SHEPA04065 | RLMF_SHEPA | PFAM: protein of unknown function DUF890 KEGG: slo:Shew_3741 protein of unknown function DUF890 protein of unknown function DUF890 |
| [B] Shewanella piezotolerans (strain WP3 / JCM 13877) | SHEPW04767 | B8CVH7 | Putative uncharacterized protein |
| [B] Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) | SHEPC00128 | RLMF_SHEPC | Putative uncharacterized protein |
| [B] Shewanella sediminis (strain HAW-EB3) | SHESH04414 | RLMF_SHESH | KEGG: slo:Shew_3741 protein of unknown function DUF890 protein of unknown function DUF890 |
| [B] Shewanella sp. (strain ANA-3) | SHESA00126 | RLMF_SHESA | protein of unknown function DUF890 PFAM: protein of unknown function DUF890 KEGG: son:SO0134 hypothetical protein |
| [B] Shewanella sp. (strain MR-4) | SHESM00127 | RLMF_SHESM | Hypothetical protein |
| [B] Shewanella sp. (strain MR-7) | SHESR00122 | RLMF_SHESR | Hypothetical protein |
| [B] Shewanella sp. (strain W3-18-1) | SHESW03858 | RLMF_SHESW | protein of unknown function DUF890 PFAM: protein of unknown function DUF890 KEGG: shm:Shewmr7_0122 protein of unknown function DUF890 |
| [B] Shewanella woodyi (strain ATCC 51908 / MS32) | SHEWM04757 | RLMF_SHEWM | Putative uncharacterized protein |
| [B] Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) | CITK802248 | RLMF_CITK8 | Putative uncharacterized protein |
| [B] Enterobacter sakazakii (strain ATCC BAA-894) | ENTS802466 | RLMF_ENTS8 | Putative uncharacterized protein |
| [B] Enterobacter sp. (strain 638) | ENT3801283 | RLMF_ENT38 | Putative uncharacterized protein |
| [B] Erwinia tasmaniensis (strain DSM 17950 / ET1/99) | ERWT902209 | B2VBZ9 | Putative uncharacterized protein |
| [B] Escherichia coli (strain 55989 / EAEC) | ECO5500814 | RLMF_ECO55 | Putative AdoMet-dependent methyltransferase |
| [B] Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) | ECOLC02753 | RLMF_ECOLC | Putative uncharacterized protein |
| [B] Escherichia coli (strain DH10B) | ECODH00704 | RLMF_ECODH | Predicted SAM-dependent methyltransferase |
| [B] Escherichia coli (strain K12) | ECOLI00766 | RLMF_ECOLI | Ribosomal RNA large subunit methyltransferase F |
| [B] Escherichia coli (strain SE11) | ECOSE00854 | B6I7W4 | Putative uncharacterized protein |
| [B] Escherichia coli (strain SMS-3-5 / SECEC) | ECOSM00788 | RLMF_ECOSM | Putative uncharacterized protein |
| [B] Escherichia coli (strain UTI89 / UPEC) | ECOUT00784 | ABE06296.1 | hypothetical protein YbiN |
| [B] Escherichia coli O127:H6 (strain E2348/69 / EPEC) | ECO2700738 | RLMF_ECO27 | Predicted SAM-dependent methyltransferase |
| [B] Escherichia coli O139:H28 (strain E24377A / ETEC) | ECO2400823 | ABV17072.1 | Putative uncharacterized protein |
| [B] Escherichia coli O157:H7 | ECO5700873 | NP_286571.1 | Residues 1 to 335 of 335 are 99.10 pct identical to residues 1 to 335 of 335 from Escherichia coli K-12 Strain MG1655: B0807 orf, hypothetical protein |
| [B] Escherichia coli O157:H7 (strain EC4115 / EHEC) | ECO5E00862 | RLMF_ECO5E | Putative uncharacterized protein |
| [B] Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) | ECOLU00925 | RLMF_ECOLU | Putative AdoMet-dependent methyltransferase |
| [B] Escherichia coli O1:K1 / APEC | ECOK100692 | ABJ00187.1 | conserved hypothetical protein |
| [B] Escherichia coli O45:K1 (strain S88 / ExPEC) | ECO4500774 | RLMF_ECO45 | Putative AdoMet-dependent methyltransferase |
| [B] Escherichia coli O6 | ECOL600849 | AAN79365.1 | Hypothetical protein ybiN |
| [B] Escherichia coli O6:K15:H31 (strain 536) | ECOL500801 | RLMF_ECOL5 | hypothetical protein YbiN |
| [B] Escherichia coli O7:K1 (strain IAI39 / ExPEC) | ECO7I00739 | RLMF_ECO7I | Putative AdoMet-dependent methyltransferase |
| [B] Escherichia coli O81 (strain ED1a) | ECO8100741 | RLMF_ECO81 | Putative AdoMet-dependent methyltransferase |
| [B] Escherichia coli O9:H4 (strain HS) | ECOHS00796 | ABV05218.1 | Putative uncharacterized protein |
| [B] Klebsiella pneumoniae (strain 342) | KLEP303643 | RLMF_KLEP3 | Putative uncharacterized protein |
| [B] Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) | KLEP700808 | RLMF_KLEP7 | Putative methyltransferase |
| [B] Erwinia carotovora (subsp. atroseptica) | ERWCT00751 | RLMF_ERWCT | Similar to Salmonella typhimurium putative SAM-dependent methyltransferase stm0826 SWALL:Q8ZQN4 (EMBL:AE008734) (308 aa) fasta scores: E(): 9.1e-81, 62.54% id in 307 aa, and to Escherichia coli hypothetical protein YbiN SWALL:YBIN_ECOLI (SWALL:P75782) (308 aa) fasta scores: E(): 1e-79, 61.23% id in 307 aa. conserved hypothetical protein |
| [B] Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) | SALAR02017 | RLMF_SALAR | Putative uncharacterized protein |
| [B] Salmonella agona (strain SL483) | SALA400798 | RLMF_SALA4 | Putative methyltransferase YbiN |
| [B] Salmonella dublin (strain CT_02021853) | SALDC00833 | RLMF_SALDC | Putative methyltransferase YbiN |
| [B] Salmonella enteritidis PT4 (strain P125109) | SALEP00764 | RLMF_SALEP | Putative uncharacterized protein ybiN |
| [B] Salmonella gallinarum (strain 287/91 / NCTC 13346) | SALG200784 | RLMF_SALG2 | Putative uncharacterized protein ybiN |
| [B] Salmonella heidelberg (strain SL476) | SALHS00882 | RLMF_SALHS | Putative methyltransferase YbiN |
| [B] Salmonella newport (strain SL254) | SALNS00834 | RLMF_SALNS | Putative methyltransferase YbiN |
| [B] Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) | SALPB02583 | RLMF_SALPB | Putative uncharacterized protein |
| [B] Salmonella paratyphi A (strain AKU_12601) | SALPK01872 | RLMF_SALPK | Putative SAM-dependent methyltransferase |
| [B] Salmonella paratyphi-a | SALPA01790 | RLMF_SALPA | similar to Salmonella typhimurium putative SAM-dependent methyltransferase putative SAM-dependent methyltransferase |
| [B] Salmonella schwarzengrund (strain CVM19633) | SALSV00907 | RLMF_SALSV | Putative uncharacterized protein |
| [B] Salmonella typhimurium | SALTY00787 | RLMF_SALTY | putative SAM-dependent methyltransferase |
| [B] Serratia proteamaculans (strain 568) | SERP501458 | RLMF_SERP5 | Putative uncharacterized protein |
| [B] Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) | SHIB301934 | RLMF_SHIB3 | Ribosomal RNA large subunit methyltransferase F |
| [B] Shigella boydii serotype 4 (strain Sb227) | SHIBS00560 | ABB65371.1 | Code: R; COG: COG3129 conserved hypothetical protein |
| [B] Shigella dysenteriae serotype 1 (strain Sd197) | SHIDS00608 | ABB60972.1 | Code: R; COG: COG3129; orf conserved hypothetical protein |
| [B] Shigella flexneri | SHIFL00697 | NP_706685.1 | Residues 1 to 335 of 335 are 99 pct identical to residues 1 to 335 of a 335 aa protein from Escherichia coli K12 ref: NP_415328.1 orf, conserved hypothetical protein |
| [B] Shigella flexneri serotype 5b (strain 8401) | SHIF800679 | ABF03022.1 | conserved hypothetical protein Code: R; COG: COG3129 |
| [B] Shigella sonnei (strain Ss046) | SHISS00664 | AAZ87534.1 | Code: R; COG: COG3129 conserved hypothetical protein |
| [B] Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) | YERE802681 | RLMF_YERE8 | Hypothetical protein |
| [B] Yersinia pestis | YERPE02327 | RLMF_YERPE | Ribosomal RNA large subunit methyltransferase F |
| [B] Yersinia pestis (biovar Antiqua strain Antiqua) | YERPA01897 | RLMF_YERPA | Hypothetical protein |
| [B] Yersinia pestis (biovar Antiqua strain Nepal516) | YERPN02021 | RLMF_YERPN | Hypothetical protein |
| [B] Yersinia pestis (strain Pestoides F) | YERPP01820 | RLMF_YERPP | Hypothetical protein |
| [B] Yersinia pestis bv. Antiqua (strain Angola) | YERPG01541 | RLMF_YERPG | Ribosomal RNA large subunit methyltransferase F |
| [B] Yersinia pseudotuberculosis | YERPS02532 | RLMF_YERPS | Ribosomal RNA large subunit methyltransferase F |
| [B] Yersinia pseudotuberculosis (serotype O:1b / strain IP 31758) | YERP301455 | RLMF_YERP3 | Putative uncharacterized protein |
| [B] Yersinia pseudotuberculosis serotype IB (strain PB1/+) | YERPB02587 | ACC89607.1 | Putative uncharacterized protein |
| [B] Yersinia pseudotuberculosis serotype O:3 (strain YPIII) | YERPY01566 | ACA67889.1 | Putative uncharacterized protein |
| [B] Marinomonas sp. (strain MWYL1) | MARMS03991 | RLMF_MARMS | Putative uncharacterized protein |
| [B] Psychrobacter arcticus (strain DSM 17307 / 273-4) | PSYA200008 | RLMF_PSYA2 | Probable SAM-dependent methyltransferase |
| [B] Psychrobacter cryohalolentis (strain K5) | PSYCK00008 | ABE73792.1 | protein of unknown function DUF890 |
| [B] Psychrobacter sp. (strain PRwf-1) | PSYWF00007 | RLMF_PSYWF | Putative uncharacterized protein |
| [B] Pseudomonas aeruginosa | PSEAE03832 | RLMF_PSEAE | Ribosomal RNA large subunit methyltransferase F |
| [B] Pseudomonas aeruginosa (strain LESB58) | PSEA801126 | RLMF_PSEA8 | Putative uncharacterized protein |
| [B] Pseudomonas aeruginosa (strain PA7) | PSEA701231 | ABR83732.1 | Putative uncharacterized protein |
| [B] Pseudomonas aeruginosa (strain UCBPP-PA14) | PSEAB01128 | RLMF_PSEAB | conserved hypothetical protein |
| [B] Pseudomonas entomophila (strain L48) | PSEE404125 | RLMF_PSEE4 | conserved hypothetical protein Evidence 4 : Homologs of previously reported genes of unknown function |
| [B] Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) | PSEF501041 | AAY90349.1 | identified by match to protein family HMM PF05971 conserved hypothetical protein |
| [B] Pseudomonas fluorescens (strain PfO-1) | PSEPF00980 | RLMF_PSEPF | Protein of unknown function DUF890 |
| [B] Pseudomonas mendocina (strain ymp) | PSEMY03480 | RLMF_PSEMY | Putative uncharacterized protein |
| [B] Pseudomonas putida (strain F1 / ATCC 700007) | PSEP100997 | RLMF_PSEP1 | Putative uncharacterized protein |
| [B] Pseudomonas putida (strain GB-1) | PSEPG00973 | RLMF_PSEPG | protein of unknown function DUF890 PFAM: protein of unknown function DUF890 KEGG: pen:PSEEN4447 hypothetical protein |
| [B] Pseudomonas putida (strain KT2440) | PSEPK00963 | RLMF_PSEPK | similar to SP:P75782; identified by sequence similarity; putative conserved hypothetical protein |
| [B] Pseudomonas putida (strain W619) | PSEPW04213 | RLMF_PSEPW | Putative uncharacterized protein |
| [B] Pseudomonas stutzeri (strain A1501) | PSEU502971 | RLMF_PSEU5 | Predicted SAM-dependent methyltransferase |
| [B] Pseudomonas syringae (pv. tomato) | PSESM01188 | NP_791097.1 | conserved hypothetical protein |
| [B] Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) | PSE1401077 | AAZ34734.1 | identified by match to protein family HMM PF05971 Predicted SAM-dependent methyltransferases |
| [B] Pseudomonas syringae pv. syringae (strain B728a) | PSEU201074 | RLMF_PSEU2 | Protein of unknown function DUF890 |
| [B] Aliivibrio salmonicida (strain LFI1238) | ALISL02735 | B6EQ07 | Putative uncharacterized protein |
| [B] Vibrio fischeri (strain MJ11) | VIBFM03821 | RLMF_VIBFM | Putative methyltransferase YbiN |
| [B] Photobacterium profundum | PHOPR04130 | RLMF_PHOPR | hypothetical SAM-dependent methyltransferase |
| [B] Vibrio cholerae | VIBCH01586 | RLMF_VIBCH | identified by Glimmer2; putative conserved hypothetical protein |
| [B] Vibrio cholerae serotype O1 (strain M66-2) | VIBCM01521 | RLMF_VIBCM | |
| [B] Vibrio fischeri (strain ATCC 700601 / ES114) | VIBF103715 | RLMF_VIBF1 | methyltransferase |
| [B] Vibrio harveyi (strain ATCC BAA-1116 / BB120) | VIBHB01868 | RLMF_VIBHB | Putative uncharacterized protein |
| [B] Vibrio parahaemolyticus | VIBPA01323 | RLMF_VIBPA | similar to GB:AAF94768.1 (AE004238) percent identity 58 in 364 aa conserved hypothetical protein |
| [B] Vibrio splendidus (strain LGP32) | VIBSL01578 | B7VPB4 | Putative uncharacterized protein |
| [B] Vibrio vulnificus | VIBVU02513 | RLMF_VIBVU | COG3129 Predicted SAM-dependent methyltransferase |
| [B] Vibrio vulnificus (strain YJ016) | VIBVY01484 | RLMF_VIBVY | Predicted SAM-dependent methyltransferase |