List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 234888

Chorismate lyase
This group has 5 members: 5 [B]acteria
Fingerprint: LIARCEC

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Burkholderia pseudomallei (strain 1710b)BURP104915  UniProtKB/Swiss-Prot UBIC1_BURP1  Chorismate lyase superfamily identified by match to protein family HMM PF04345
[B] Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337)RALEH03083  UniProtKB/Swiss-Prot UBIC_RALEH  chorismate lyase
[B] Ralstonia solanacearumRALSO02753   NP_520901.1  Product confidence : hypothetical Gene name confidence : hypothetical predicted by Codon_usage predicted by Homology predicted by FrameD CONSERVED HYPOTHETICAL PROTEIN
[B] Herminiimonas arsenicoxydansHERAR02622  UniProtKB/TrEMBL A4G8N6  Putative chorismate--pyruvate lyase
[B] Pseudomonas fluorescens (strain PfO-1)PSEPF00706  UniProtKB/Swiss-Prot UBIC1_PSEPF  Chorismate lyase