List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
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OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 248731

family 47 protein
This group has 7 members: 7 [E]ukaryota
Fingerprint: LFECNIR

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[E] Helobdella robustaHELRO02590   106488  jgi|Helro1|106488
[E] Daphnia pulexDAPPU00887   estExt_Genewise1Plus.C_10692  jgi|Dappu1|190238|estExt_Genewise1Plus.C_10692
[E] Oryza sativaORYSA06271   BAF09994.1  Glycoside hydrolase, family 47 protein contains InterPro domain(s): IPR001382 has GO asignment(s): GO:0005509, GO:0006487, GO:0016020 supported by AK120667
[E] Sorghum bicolorSORBI09656   4812464  jgi|Sorbi1|4812464|e_gw1.4.15851.1
[E] Populus trichocarpaPOPTR17759  UniProtKB/TrEMBL B9IEM0  jgi|Poptr1_1|575111|eugene3.00150506
[E] Arabidopsis thalianaARATH02571  UniProtKB/TrEMBL Q9SXC9  glycoside hydrolase family 47 protein, Similar to gb|U04299 mannosyl-oligosaccharide alpha-1,2-mannosidase from Mus musculus. ESTs gb|R84145 and gb|AA394707 come from this gene; go_component: endomembrane system [goid GO:0004559@[ISS]; GO:0004571@[IEA]; GO:0005509@[IEA]; GO:0006487@[ISS]; GO:0012505@[IEA]; GO:0016020@[IEA]] [evidence IEA]; go_component: membrane [goid GO:0016020] [evidence IEA]; go_function: alpha-mannosidase activity [goid GO:0004559] [evidence ISS]; go_function: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity [goid GO:0004571] [evidence IEA]; go_function: calcium ion binding [goid GO:0005509] [evidence IEA]; go_process: protein amino acid N-linked glycosylation [goid GO:0006487] [evidence IEA]; go_process: protein amino acid N-linked glycosylation [goid GO:0006487] [evidence ISS] alpha-mannosidase/ calcium ion binding / mannosyl-oligosaccharide 1,2-alpha-mannosidase
[E] Vitis viniferaVITVI18589  UniProtKB/TrEMBL A7PD65