List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 225949

Glycoside hydrolase family 25
This group has 9 members: 9 [B]acteria
Fingerprint: VSENDAR

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Bacillus cereus (strain AH187)BACC702066  UniProtKB/TrEMBL B7HP83  Endolysin
[B] Bacillus cereus (strain ATCC 14579 / DSM 31)BACCR02441  UniProtKB/TrEMBL Q81CY6  N-acetylmuramoyl-L-alanine amidase
[B] Bacillus cereus (strain G9842)BACC203751  UniProtKB/TrEMBL B7ITQ7  Endolysin
[B] Bacillus cereus subsp. cytotoxis (strain NVH 391-98)BACCN02782  UniProtKB/TrEMBL A7GSQ4  Glycoside hydrolase family 25
[B] Bacillus weihenstephanensis (strain KBAB4)BACWK03478  UniProtKB/TrEMBL A9VS47  Glycoside hydrolase family 25
[B] Staphylococcus epidermidis (strain ATCC 12228)STAES02329  UniProtKB/TrEMBL Q8CMP9  1,4-beta-N-acetylmuramidase
[B] Staphylococcus epidermidis (strain ATCC 35984 / RP62A)STAEQ00043  UniProtKB/TrEMBL Q5HRZ6  lysozyme domain protein
[B] Staphylococcus haemolyticus (strain JCSC1435)STAHJ02555  UniProtKB/TrEMBL Q4L339  hypothetical protein, similar to 1,4-beta-N-acetylmuramidase
[B] Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229)STAS102371  UniProtKB/TrEMBL Q49UP9  similar to gi|27469291|ref|NP_765928.1| [Staphylococcus epidermidis ATCC 12228], percent identity 59 in 269 aa, BLASTP E(): 1e-89 putative 14-beta-N-acetylmuramidase