List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 29116

DNA polymerase III
This group has 29 members: 29 [B]acteria
Fingerprint: LATNRNG

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109)CORU700408  UniProtKB/TrEMBL B1VF33  DNA polymerase III, alpha subunit
[B] Caulobacter crescentusCAUCR03164  UniProtKB/Swiss-Prot DNAE2_CAUCR  Error-prone DNA polymerase
[B] Caulobacter sp. (strain K31)CAUSK04378  UniProtKB/TrEMBL B0T091  DNA polymerase III, alpha subunit
[B] Phenylobacterium zucineum (strain HLK1)PHEZH03253  UniProtKB/TrEMBL B4RAS9  DNA polymerase III, alpha subunit
[B] Bradyrhizobium sp. (strain ORS278)BRASO02483  UniProtKB/Swiss-Prot DNAE2_BRASO  Error-prone DNA polymerase
[B] Nitrobacter hamburgensis (strain X14 / DSM 10229)NITHX02506  UniProtKB/TrEMBL Q1QK02  DNA polymerase III, alpha subunit
[B] Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391)NITWN02125  UniProtKB/TrEMBL Q3SQD2  DNA polymerase III, alpha subunit
[B] Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5)OLICO01157  UniProtKB/TrEMBL B6JC93  Error-prone DNA polymerase
[B] Rhodopseudomonas palustris (strain BisB18)RHOPB01705  UniProtKB/TrEMBL Q217Z4  DNA polymerase III, alpha subunit
[B] Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168)OCHA400078  UniProtKB/TrEMBL A6WV06  DNA polymerase III, alpha subunit
[B] Rhizobium lotiRHILO03400  UniProtKB/Swiss-Prot DNAE2_RHILO  DNA polymerase III alpha chain
[B] Agrobacterium radiobacter (strain K84 / ATCC BAA-868)AGRRK03700  UniProtKB/TrEMBL B9JES8  DNA polymerase III alpha subunit protein
[B] Rhizobium etli (strain CIAT 652)RHIE604310  UniProtKB/TrEMBL B3PS10  DNA polymerase III protein, alpha subunit
[B] Rhizobium leguminosarum bv. viciae (strain 3841)RHIL304680  UniProtKB/TrEMBL Q1MA60  putative DNA polymerase III alpha subunit similarity:fasta; with=UniProt:DPO3A_ECOLI (EMBL:ECPOLCACC); Escherichia coli.; dnaE; DNA polymerase III alpha subunit (EC 2.7.7.7).; length=1160; id 25.378; 1123 aa overlap; query 3-1086; subject 2-1076 similarity:fasta; with=UniProt:Q92LA6_RHIME (EMBL:SME591793); Rhizobium meliloti (Sinorhizobium meliloti).; PUTATIVE DNA POLYMERASE III ALPHA CHAIN PROTEIN (EC 2.7.7.7).; length=1116; id 66.407; 1155 aa overlap; query 1-1154; subject 1-1116
[B] Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)AZOC503893  UniProtKB/TrEMBL A8IKG2  DNA polymerase III alpha subunit
[B] Jannaschia sp. (strain CCS1)JANSC01552  UniProtKB/TrEMBL Q28S37  DNA polymerase III, alpha subunit
[B] Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273)SPHWW01109  UniProtKB/TrEMBL A5V5B9  DNA polymerase III, alpha subunit
[B] Sphingopyxis alaskensisSPHAL02747  UniProtKB/TrEMBL Q1GPD7  DNA polymerase III, alpha subunit
[B] Burkholderia phytofirmans (strain DSM 17436 / PsJN)BURPP01327  UniProtKB/TrEMBL B2T2I8  DNA polymerase III, alpha subunit
[B] Burkholderia xenovorans (strain LB400)BURXL01253  UniProtKB/TrEMBL Q142C4  DNA polymerase III, alpha subunit
[B] Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839)RALME04026  UniProtKB/TrEMBL Q1LFS9  DNA polymerase III, alpha subunit
[B] Ralstonia solanacearumRALSO04180  UniProtKB/Swiss-Prot DNAE2_RALSO  Product confidence : probable Gene name confidence : putative predicted by Codon_usage predicted by Homology predicted by FrameD PROBABLE DNA POLYMERASE III (ALPHA CHAIN) PROTEIN
[B] Methylibium petroleiphilum (strain PM1)METPP01497  UniProtKB/TrEMBL A2SG05  DNA-directed DNA polymerase
[B] Herminiimonas arsenicoxydansHERAR00615  UniProtKB/TrEMBL A4G2X2  Putative DNA polymerase III alpha subunit
[B] Bdellovibrio bacteriovorusBDEBA00348  UniProtKB/Swiss-Prot DNAE2_BDEBA  InterPro: DNA polymerase III alpha subunit hypothetical protein DNA polymerase III, alpha chain
[B] Alteromonas macleodii (strain DSM 17117 / Deep ecotype)ALTMD00038  UniProtKB/TrEMBL B4S260  Putative DNA polymerase III alpha chain
[B] Methylococcus capsulatusMETCA02025  UniProtKB/Swiss-Prot DNAE2_METCA  identified by similarity to SP:O34623; match to protein family HMM PF01336; match to protein family HMM PF02231; match to protein family HMM TIGR00594 DNA polymerase III, alpha subunit, putative
[B] Hahella chejuensis (strain KCTC 2396)HAHCH02075  UniProtKB/Swiss-Prot DNAE2_HAHCH  DNA polymerase III, alpha subunit COG0587
[B] Vibrio parahaemolyticusVIBPA02032  UniProtKB/Swiss-Prot DNAE2_VIBPA  similar to GB:AAG04058.1 (AE004502) percent identity 50 in 1029 aa putative DNA polymerase III alpha chain