List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 56442

group 1 family protein
This group has 14 members: 2 [A]rchaea 12 [B]acteria
Fingerprint: KIRYARN

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[A] Halobacterium salinariumHALSA00045  UniProtKB/TrEMBL Q9HSW1  LPS biosynthesis
[A] Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)HALS300048  UniProtKB/TrEMBL B0R8G0  Putative glycosyltransferase, type 1
[B] Streptomyces coelicolorSTRCO00376  UniProtKB/TrEMBL Q9RJJ7  SCF62.17, possible transferase, len: 413 aa. Similar to many including Streptomyces coelicolor TR:Q9Z5B7 (EMBL:AL035478) putative transferase SC2G5.06 (406 aa), fasta scores opt: 263 z-score: 301.1 E(): 2.1e-09 31.9% identity in 385 aa overlap and Erwinia amylovora SW:AMSK_ERWAM (EMBL:X77921) amylovoran biosynthesis protein AmsK (407 aa), fasta scores opt: 224 z-score: 257.0 E(): 5.8e-07 28.4% identity in 232 aa overlap. Contains a Pfam match to entry PF00534 Glycos_transf_1, Glycosyl transferases group 1 putative transferase
[B] Bradyrhizobium sp. (strain ORS278)BRASO06635  UniProtKB/TrEMBL A4Z3A0  Putative glycosyltransferase, group 1
[B] Burkholderia vietnamiensis (strain G4 / LMG 22486)BURVG04594  UniProtKB/TrEMBL A4JN71  Glycosyl transferase, group 1
[B] Burkholderia malleiBURMA00018  UniProtKB/TrEMBL A5J6Z9  Glycosyl transferase, group 1 family protein
[B] Burkholderia mallei (strain NCTC 10229)BURM902081  UniProtKB/TrEMBL A2S8A3  Glycosyl transferase, group 1 family protein
[B] Burkholderia mallei (strain NCTC 10247)BURM702323  UniProtKB/TrEMBL A3MP38  Glycosyl transferase, group 1 family protein
[B] Burkholderia mallei (strain SAVP1)BURMS02698  UniProtKB/TrEMBL A1V7G7  Glycosyl transferase, group 1 family protein
[B] Burkholderia pseudomalleiBURPS00607  UniProtKB/TrEMBL A8KIX1  Similar to Escherichia coli glycosyltransferase WcaO SWALL:Q9X4C4 (EMBL:AF104912) (393 aa) fasta scores: E(): 1.5e-22, 28.93% id in 356 aa, and to Rhizobium meliloti putative glycosyltransferase, forming alpha-gylcosyl linkages protein ExpE4 or rb0887 or smb21311 SWALL:P96434 (EMBL:Z79692) (420 aa) fasta scores: E(): 8e-10, 28.57% id in 350 aa putative glycosyl transferase
[B] Burkholderia pseudomallei (strain 1106a)BURP000635  UniProtKB/TrEMBL A3NRF4  Glycosyl transferase, group 1 family protein
[B] Burkholderia pseudomallei (strain 1710b)BURP100788  UniProtKB/TrEMBL Q3JW33  glycosyl transferase, group 1 family protein identified by match to protein family HMM PF00534
[B] Burkholderia pseudomallei (strain 668)BURP600624  UniProtKB/TrEMBL A3N5Q9  Glycosyltransferase
[B] Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301)BURTA00512  UniProtKB/TrEMBL Q2T171  glycosyl transferase, group 1 family protein identified by match to protein family HMM PF00534