List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA Group 185043
Glycoside hydrolase family 43
This group has 9 members: 3 [E]ukaryota 6 [B]acteria
Fingerprint: KGCILER
| [E] Oryza sativa | ORYSA25615 | BAF29649.1 | Glycoside hydrolase, family 43 protein contains InterPro domain(s): IPR006710 has GO asignment(s): GO:0005975@[NR] supported by AK070373 |
| [E] Sorghum bicolor | SORBI31822 | C5WTU3 | jgi|Sorbi1|5049987|Sb01g043810 |
| [E] Arabidopsis thaliana | ARATH14903 | Q9M2X0 | glycosyl hydrolase family protein 43, contains similarity to xylanase GI:2645416 from (Caldicellulosiruptor saccharolyticus); go_component: mitochondrion [goid GO:0004553@[IEA]; GO:0005575@[ND]; GO:0005975@[IEA]; GO:0005739@[NR]] [evidence IEA] unknown protein |
| [B] Bacteroides fragilis | BACFR03753 | Q64PR6 | similar to gp:AE016941_169 [Bacteroides thetaiotaomicron VPI-5482], percent identity 52 in 348 aa, BLASTP E(): e-101 beta-glucanase precursor |
| [B] Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) | BACFN03463 | Q5L9H8 | Low similarity to Bacteroides thetaiotaomicron conserved hypothetical protein BT2112 SWALL:Q8A5X4 (EMBL:AE016934) (345 aa) fasta scores: E(): 5e-35, 42.96% id in 384 aa, and to Streptomyces avermitilis hypothetical protein SAV2109 SWALL:Q82LA2 (EMBL:AP005029) (464 aa) fasta scores: E(): 1.2e-17, 32.98% id in 379 aa conserved hypothetical exported protein |
| [B] Bacteroides thetaiotaomicron | BACTN03645 | Q8A1H6 | Beta-glucanase |
| [B] Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) | BACV800473 | A6KXQ4 | Glycoside hydrolase family 43, candidate beta- glycosidase |
| [B] Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) | PARD802313 | A6LEL1 | Glycoside hydrolase family 43, candidate beta- glycosidase |
| [B] Akkermansia muciniphila (strain ATCC BAA-835) | AKKM800688 | B2UQ00 | Beta-glucanase precursor |