List of all proteins in the group
Allows comparison of IDs and descriptions
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Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
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The close groups are made of the set of all
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Note that not all pairs of proteins coming
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Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
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proteins that have complementary function
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This function displays a table of all
Gene Ontology (GO) annotations on
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allows to compare the annotations
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The fingerprint is a subsequence that is specific to a
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OMA

Keyword Protein Sequence Group Entry

OMA Group 25294

Peptide def
This group has 40 members: 40 [B]acteria
Fingerprint: KELIANM

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670)ACIC502965  UniProtKB/Swiss-Prot DEF_ACIC5  Peptide deformylase
[B] Solibacter usitatus (strain Ellin6076)SOLUE02692  UniProtKB/TrEMBL Q023V6  peptide deformylase KEGG: aba:Acid345_4287 peptide deformylase TIGRFAM: peptide deformylase PFAM: formylmethionine deformylase
[B] Symbiobacterium thermophilumSYMTH01320  UniProtKB/Swiss-Prot DEF_SYMTH  polypeptide deformylase
[B] Aquifex aeolicusAQUAE00421  UniProtKB/Swiss-Prot DEF_AQUAE  Peptide deformylase
[B] Bacteroides fragilisBACFR01677  UniProtKB/Swiss-Prot DEF_BACFR  similar to gp:AE016927_153 [Bacteroides thetaiotaomicron VPI-5482], percent identity 88 in 184 aa, BLASTP E(): 8e-90 peptide deformylase
[B] Bacteroides fragilis (strain ATCC 25285 / NCTC 9343)BACFN01608  UniProtKB/Swiss-Prot DEF_BACFN  Similar to Leptospira interrogans peptide deformylase Def or Pdf or la2438 SWALL:DEF_LEPIN (SWALL:Q93LE9) (178 aa) fasta scores: E(): 6.7e-16, 38.6% id in 158 aa, and to Bacteroides thetaiotaomicron peptide deformylase BT0420 SWALL:Q8AAP4 (EMBL:AE016927) (184 aa) fasta scores: E(): 3.3e-59, 88.58% id in 184 aa, and to Porphyromonas gingivalis W83 polypeptide deformylase Def or PG2201 SWALL:AAQ67143 (EMBL:AE017179) (189 aa) fasta scores: E(): 2.9e-43, 65.19% id in 181 aa putative peptide deformylase
[B] Bacteroides thetaiotaomicronBACTN00417  UniProtKB/Swiss-Prot DEF_BACTN  Peptide deformylase
[B] Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154)BACV803848  UniProtKB/Swiss-Prot DEF_BACV8  Peptide deformylase
[B] Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)PARD800630  UniProtKB/Swiss-Prot DEF_PARD8  Peptide deformylase
[B] Porphyromonas gingivalisPORGI01830  UniProtKB/Swiss-Prot DEF_PORGI  polypeptide deformylase
[B] Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257)PORG301998  UniProtKB/Swiss-Prot DEF_PORG3  Putative peptide deformylase
[B] Chlorobaculum parvum (strain NCIB 8327)CHLP801520  UniProtKB/Swiss-Prot DEF_CHLP8  Peptide deformylase
[B] Chlorobium limicola (strain DSM 245 / NBRC 103803)CHLL201602  UniProtKB/Swiss-Prot DEF_CHLL2  Peptide deformylase
[B] Bacillus amyloliquefaciens (strain FZB42)BACA201469  UniProtKB/TrEMBL A7Z4J2  DefA
[B] Bacillus subtilisBACSU01571  UniProtKB/Swiss-Prot DEF1_BACSU  Peptide deformylase 1
[B] Heliobacterium modesticaldum (strain ATCC 51547 / Ice1)HELMI02000  UniProtKB/Swiss-Prot DEF_HELMI  Peptide deformylase
[B] Granulobacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1)GRABC00692  UniProtKB/TrEMBL Q0BUB2  Peptide deformylase
[B] Rickettsia bellii (strain OSU 85-389)RICB800576  UniProtKB/TrEMBL A8GVX5  Peptide deformylase
[B] Rickettsia bellii (strain RML369-C)RICBR00544  UniProtKB/TrEMBL Q1RJ23  Polypeptide deformylase
[B] Desulfotalea psychrophilaDESPS00746  UniProtKB/Swiss-Prot DEF_DESPS  probable peptide deformylase
[B] Helicobacter acinonychis (strain Sheeba)HELAH00804  UniProtKB/Swiss-Prot DEF_HELAH  polypeptide deformylase Peptide deformylase (EC 3.5.1.88) (PDF) (Polypeptide deformylase) High confidence in function and specificity
[B] Helicobacter pyloriHELPY00782  UniProtKB/Swiss-Prot DEF_HELPY  similar to SP:P27251 GB:X77800 PID:41474 PID:443989 PID:471304 percent identity: 41.82; identified by sequence similarity; putative polypeptide deformylase (def)
[B] Helicobacter pylori (strain G27)HELPG00726  UniProtKB/Swiss-Prot DEF_HELPG  Polypeptide deformylase
[B] Helicobacter pylori (strain HPAG1)HELPH00778  UniProtKB/Swiss-Prot DEF_HELPH  polypeptide deformylase
[B] Wolinella succinogenesWOLSU02008  UniProtKB/Swiss-Prot DEF_WOLSU  POLYPEPTIDE DEFORMYLASE PDF FORMYLMETHIONINEDEFORMYLASE
[B] Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH)NAUPA01667  UniProtKB/Swiss-Prot DEF_NAUPA  Peptide deformylase
[B] Nitratiruptor sp. (strain SB155-2)NITSB00166  UniProtKB/TrEMBL A6Q1C2  Peptide deformylase
[B] Shewanella baltica (strain OS155 / ATCC BAA-1091)SHEB502065  UniProtKB/TrEMBL A3D4Y4  Peptide deformylase
[B] Shewanella baltica (strain OS185)SHEB801978  UniProtKB/TrEMBL A6WMX7  Peptide deformylase
[B] Shewanella baltica (strain OS195)SHEB902038  UniProtKB/TrEMBL A9L0G1  KEGG: shw:Sputw3181_2230 peptide deformylase TIGRFAM: peptide deformylase PFAM: formylmethionine deformylase peptide deformylase
[B] Shewanella baltica (strain OS223)SHEB202241  UniProtKB/TrEMBL B8E590  Peptide deformylase
[B] Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)SHEDO00879  UniProtKB/TrEMBL Q12QU0  Peptide deformylase
[B] Shewanella halifaxensis (strain HAW-EB4)SHEHH01883  UniProtKB/TrEMBL B0TRP3  Peptide deformylase
[B] Shewanella pealeana (strain ANG-SQ1 / ATCC 700345)SHEPA02329  UniProtKB/TrEMBL A8H570  KEGG: shm:Shewmr7_2219 peptide deformylase TIGRFAM: peptide deformylase PFAM: formylmethionine deformylase peptide deformylase
[B] Shewanella piezotolerans (strain WP3 / JCM 13877)SHEPW02199  UniProtKB/TrEMBL B8CNU7  Peptide deformylase
[B] Shewanella putrefaciens (strain CN-32 / ATCC BAA-453)SHEPC01763  UniProtKB/TrEMBL A4Y6D7  Peptide deformylase
[B] Shewanella sediminis (strain HAW-EB3)SHESH01999  UniProtKB/TrEMBL A8FUU2  KEGG: sbl:Sbal_2302 peptide deformylase Peptide deformylase
[B] Shewanella sp. (strain MR-4)SHESM02127  UniProtKB/TrEMBL Q0HIA2  Peptide deformylase
[B] Shewanella sp. (strain MR-7)SHESR02191  UniProtKB/TrEMBL Q0HUJ8  Peptide deformylase
[B] Shewanella sp. (strain W3-18-1)SHESW02173  UniProtKB/TrEMBL A1RK59  peptide deformylase KEGG: shm:Shewmr7_2219 peptide deformylase TIGRFAM: peptide deformylase PFAM: formylmethionine deformylase