List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 195826

shikimate 5-dehydrogenase
This group has 21 members: 21 [B]acteria
Fingerprint: IVSDIIY

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Bacillus anthracisBACAN04204  UniProtKB/TrEMBL B1F0Z2  identified by match to TIGR protein family HMM TIGR01809 shikimate 5-dehydrogenase
[B] Bacillus cereus (strain AH187)BACC704240  UniProtKB/Swiss-Prot AROE_BACC7  Shikimate dehydrogenase
[B] Bacillus cereus (strain ATCC 10987)BACC104371  UniProtKB/Swiss-Prot AROE_BACC1  identified by match to protein family HMM PF01488; match to protein family HMM TIGR00507 shikimate 5-dehydrogenase
[B] Bacillus cereus (strain ATCC 14579 / DSM 31)BACCR04124  UniProtKB/Swiss-Prot AROE_BACCR  Shikimate 5-dehydrogenase
[B] Bacillus cereus (strain G9842)BACC204348  UniProtKB/Swiss-Prot AROE_BACC2  Shikimate dehydrogenase
[B] Bacillus cereus (strain ZK)BACCZ04040  UniProtKB/Swiss-Prot AROE_BACCZ  shikimate 5-dehydrogenase
[B] Bacillus cereus subsp. cytotoxis (strain NVH 391-98)BACCN02906  UniProtKB/Swiss-Prot AROE_BACCN  Shikimate 5-dehydrogenase
[B] Bacillus clausii (strain KSM-K16)BACSK01626  UniProtKB/Swiss-Prot AROE_BACSK  shikimate 5-dehydrogenase
[B] Bacillus thuringiensis (strain Al Hakam)BACAH03716  UniProtKB/Swiss-Prot AROE_BACAH  shikimate 5-dehydrogenase
[B] Bacillus thuringiensis (subsp. konkukian)BACHK04004  UniProtKB/Swiss-Prot AROE_BACHK  shikimate 5-dehydrogenase
[B] Bacillus weihenstephanensis (strain KBAB4)BACWK04077  UniProtKB/Swiss-Prot AROE_BACWK  Shikimate 5-dehydrogenase
[B] Geobacillus kaustophilusGEOKA02498  UniProtKB/TrEMBL Q5KWX7  shikimate 5-dehydrogenase
[B] Francisella philomiragia subsp. philomiragia (strain ATCC 25017)FRAP200310  UniProtKB/TrEMBL B0TZI7  Shikimate 5-dehydrogenase
[B] Francisella tularensis (subsp. tularensis)FRATT00390  UniProtKB/TrEMBL A7JB89  Similar to Q8FQC7 Putative shikimate 5-dehydrogenase from Corynebacterium efficiens(269 aa). FASTA: opt: 283 Z-score: 321.7 E(): 4.6e-10 Smith-Waterman score: 287; 28.077 identity in 260 aa overlap. Shikimate 5-dehydrogenase
[B] Francisella tularensis subsp. holarctica (strain FTA)FRATF00378  UniProtKB/TrEMBL A7NAI0  Shikimate 5-dehydrogenase
[B] Francisella tularensis subsp. holarctica (strain LVS)FRATH00437  UniProtKB/TrEMBL Q2A4U9  Shikimate 5-dehydrogenase
[B] Francisella tularensis subsp. holarctica (strain OSU18)FRATO00373  UniProtKB/TrEMBL Q0BN69  Shikimate dehydrogenase
[B] Francisella tularensis subsp. mediasiatica (strain FSC147)FRATM00448  UniProtKB/TrEMBL B2SFM5  Shikimate 5-dehydrogenase
[B] Francisella tularensis subsp. novicida (strain U112)FRATN00495  UniProtKB/TrEMBL A0Q591  shikimate 5-dehydrogenase
[B] Francisella tularensis subsp. tularensis (strain WY96-3418)FRATW01287  UniProtKB/TrEMBL A4IZK4  Shikimate , quinate 5-dehydrogenase
[B] Mycobacteriophage FRAT1FRAT100388  UniProtKB/TrEMBL Q14J38  Shikimate 5-dehydrogenase Similar to Q8FQC7 Putative shikimate 5-dehydrogenase from Corynebacterium efficiens(269 aa). FASTA: opt: 283 Z-score: 321.7 E(): 4.6e-10 Smith-Waterman score: 287; 28.077 identity in 260 aa overlap.