List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 195864

Shikimate 5-dehydrogenase
This group has 5 members: 2 [E]ukaryota 3 [B]acteria
Fingerprint: ISAYEIW

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[E] Oryza sativaORYSA01337   BAF04994.1  Dehydroquinase class I domain containing protein ab initio prediction with EST support contains InterPro domain(s): IPR001381, IPR006151, IPR000205 has GO asignment(s): GO:0003855, GO:0004764, GO:0005737, GO:0009073
[E] Populus trichocarpaPOPTR10206   gw1.VIII.57.1  jgi|Poptr1_1|418629|gw1.VIII.57.1 [DNA partly invalid]
[B] Clostridium thermocellum (strain ATCC 27405 / DSM 1237)CLOTH00821  UniProtKB/TrEMBL A3DDQ9  Shikimate 5-dehydrogenase
[B] Methylobacterium nodulans (strain ORS2060 / LMG 21967)METNO00115  UniProtKB/TrEMBL B8IUC2  Shikimate 5-dehydrogenase
[B] Anaeromyxobacter sp. (strain Fw109-5)ANADF00203  UniProtKB/Swiss-Prot AROE_ANADF  Shikimate 5-dehydrogenase