List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 199967

Histone deacetylase
This group has 13 members: 13 [E]ukaryota
Fingerprint: IPEDAPH

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[E] Oryzias latipesORYLA01134  Ensembl ENSORLP00000017757   -
[E] Gasterosteus aculeatusGASAC09336  Ensembl ENSGACP00000012045   -
[E] Takifugu rubripesFUGRU16452  Ensembl ENSTRUP00000027023  Histone deacetylase 1 (HD1)
[E] Tetraodon nigroviridisTETNG04547  Ensembl ENSTNIP00000012136  Histone deacetylase 1 (HD1)(EC 3.5.1.98) [Source:UniProtKB/Swiss-Prot;Acc:Q13547]
[E] Branchiostoma floridaeBRAFL23594  UniProtKB/TrEMBL C3ZA55  jgi|Brafl1|217516|e_gw.71.184.1
[E] Daphnia pulexDAPPU23871   PASA_GEN_5700012  jgi|Dappu1|306940|PASA_GEN_5700012
[E] Drosophila melanogasterDROME05949  UniProtKB/Swiss-Prot HDAC1_DROME  Histone deacetylase Rpd3 (HD) (dRPD3).
[E] Pristionchus pacificusPRIPA28454   WBGene00118287  status:Partially_confirmed
[E] Nematostella vectensisNEMVE04578  UniProtKB/TrEMBL A7RFA3  jgi|Nemve1|79092|e_gw.1.123.1
[E] Plasmodium falciparumPLAF705082  UniProtKB/TrEMBL Q7K6A1  
[E] Guillardia theta (nucleomorph only)GUITH00151  UniProtKB/TrEMBL Q98RL4  histone deacetylase
[E] Pichia stipitisPICST01001  UniProtKB/TrEMBL A3GHM9  histone deacetylase transcription modifier Transcription modifier required for vegetative repression of early meiosis-specific as well as non-meiotic genes required for mitotic intragenic and intergenic recombination and for sporulation
[E] Sorghum bicolorSORBI06745  UniProtKB/TrEMBL C5XY14  jgi|Sorbi1|4755857|estExt_Genewise1.C_chr_41658