List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA Group 218256
and to Bacteriophage phi-Ea1h lysozyme LyZ SWALL:Q9FZS7
This group has 7 members: 7 [B]acteria
Fingerprint: CEALLKW
| [B] Rhizobium etli (strain CFN 42 / ATCC 51251) | RHIEC01081 | Q2KB66 | putative lysozyme protein similar to Z0960 [Escherichia coli] and 28R [Xanthomonas oryzae bacteriophage Xp10] Similar to entrez-protein:O80292 Putative location:bacterial periplasmic space Psort-Score: 0.8306; go_function: hydrolase activity, acting on glycosyl bonds [goid 0016798]; go_function: hydrolase activity [goid 0016787]; go_function: catalytic activity [goid 0003824]; go_function: lysozyme activity [goid 0003796]; go_process: carbohydrate metabolism [goid 0005975]; go_process: peptidoglycan catabolism [goid 0009253]; go_process: cell wall catabolism [goid 0016998]; go_process: cytolysis [goid 0019835] |
| [B] Rhizobium etli (strain CIAT 652) | RHIE601169 | B3PT03 | Putative phage-related lysozyme protein |
| [B] Rhizobium leguminosarum bv. trifolii (strain WSM2304) | RHILW02367 | B5ZUW9 | Lysozyme |
| [B] Rhizobium leguminosarum bv. viciae (strain 3841) | RHIL303912 | Q1MCC1 | putative phage-related protein Similar to codons 65 to the C-terminus of Xanthomonas oryzae bacteriophage Xp10 28R. UniProt:Q7Y5I9_9CAUD (EMBL:AY299121) (223 aa) similarity:fasta; with=UniProt:Q7Y5I9_9CAUD (EMBL:AY299121); Xanthomonas oryzae bacteriophage Xp10.; 28R.; length=223; id 41.497; 147 aa overlap; query 8-153; subject 65-211 |
| [B] Bordetella avium (strain 197N) | BORA100424 | Q2KZ14 | Putative phage lysozyme |
| [B] Bordetella bronchiseptica | BORBR02228 | Q7WK96 | Similar to Escherichia coli probable lysozyme from lambdoid prophage qin ydfq or b1554 SWALL:LYCW_ECOLI (SWALL:P76159) (177 aa) fasta scores: E(): 0.044, 27.56% id in 185 aa, and to Bacteriophage phi-Ea1h lysozyme lyZ SWALL:Q9FZS7 (EMBL:AJ278614) (178 aa) fasta scores: E(): 0.081, 26.7% id in 191 aa putative phage lysozyme |
| [B] Bordetella pertussis | BORPE03069 | Q7VTZ0 | Similar to Serratia marcescens phage lysozyme RegB SWALL:Q54423 (EMBL:U31763) (179 aa) fasta scores: E(): 0.05, 30.76% id in 169 aa, and to Bacteriophage phi-Ea1h lysozyme LyZ SWALL:Q9FZS7 (EMBL:AJ278614) (178 aa) fasta scores: E(): 0.079, 26.7% id in 191 aa putative phage lysozyme |