List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA Group 190807
chorismate synthase
This group has 9 members: 9 [B]acteria
Fingerprint: IIEIFIT
| [B] Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) | MYCS202832 | AROC_MYCS2 | Chorismate synthase |
| [B] Streptomyces coelicolor | STRCO01479 | AROC_STRCO | SC9C5.20c, aroF, chorismate synthase, len: 394 aa; similar to SW:AROC_BACSU (EMBL:M80245) Bacillus subtilis chorismate synthase (EC 4.6.1.4) AroF, 368 aa; fasta scores: opt: 1151 z-score: 1269.7 E(): 0; 48.9% identity in 358 aa overlap. Contains Pfam match to entry PF01264 Chorismate_synt, Chorismate synthase and match to Prosite entry PS00788 Chorismate synthase signature 2 and PS00789 Chorismate synthase signature 3 chorismate synthase |
| [B] Chlorobium limicola (strain DSM 245 / NBRC 103803) | CHLL200847 | AROC_CHLL2 | Chorismate synthase |
| [B] Chlorobium phaeobacteroides (strain DSM 266) | CHLPD01702 | ABL65822.1 | Chorismate synthase PFAM: chorismate synthase KEGG: cte:CT1432 chorismate synthase |
| [B] Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) | PELPB00861 | AROC_PELPB | Chorismate synthase |
| [B] Bacillus cereus (strain G9842) | BACC201400 | B7IP94 | Chorismate synthase |
| [B] Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) | BREBN02466 | AROC_BREBN | Chorismate synthase |
| [B] Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) | THEP300719 | AROC_THEP3 | Chorismate synthase |
| [B] Lactococcus lactis subsp. cremoris (strain SK11) | LACLS01704 | AROC_LACLS | Chorismate synthase |