List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 190807

chorismate synthase
This group has 9 members: 9 [B]acteria
Fingerprint: IIEIFIT

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)MYCS202832  UniProtKB/Swiss-Prot AROC_MYCS2  Chorismate synthase
[B] Streptomyces coelicolorSTRCO01479  UniProtKB/Swiss-Prot AROC_STRCO  SC9C5.20c, aroF, chorismate synthase, len: 394 aa; similar to SW:AROC_BACSU (EMBL:M80245) Bacillus subtilis chorismate synthase (EC 4.6.1.4) AroF, 368 aa; fasta scores: opt: 1151 z-score: 1269.7 E(): 0; 48.9% identity in 358 aa overlap. Contains Pfam match to entry PF01264 Chorismate_synt, Chorismate synthase and match to Prosite entry PS00788 Chorismate synthase signature 2 and PS00789 Chorismate synthase signature 3 chorismate synthase
[B] Chlorobium limicola (strain DSM 245 / NBRC 103803)CHLL200847  UniProtKB/Swiss-Prot AROC_CHLL2  Chorismate synthase
[B] Chlorobium phaeobacteroides (strain DSM 266)CHLPD01702   ABL65822.1  Chorismate synthase PFAM: chorismate synthase KEGG: cte:CT1432 chorismate synthase
[B] Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1)PELPB00861  UniProtKB/Swiss-Prot AROC_PELPB  Chorismate synthase
[B] Bacillus cereus (strain G9842)BACC201400  UniProtKB/TrEMBL B7IP94  Chorismate synthase
[B] Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599)BREBN02466  UniProtKB/Swiss-Prot AROC_BREBN  Chorismate synthase
[B] Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E)THEP300719  UniProtKB/Swiss-Prot AROC_THEP3  Chorismate synthase
[B] Lactococcus lactis subsp. cremoris (strain SK11)LACLS01704  UniProtKB/Swiss-Prot AROC_LACLS  Chorismate synthase