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OMA

Keyword Protein Sequence Group Entry

OMA Group 25287

Peptide def
This group has 126 members: 126 [B]acteria
Fingerprint: ELKANDW

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Frankia sp. (strain CcI3)FRASC02576  UniProtKB/TrEMBL Q2J9M0  Peptide deformylase
[B] Tropheryma whipplei (strain TW08/27)TROW800438  UniProtKB/Swiss-Prot DEF_TROW8  Similar to Thermus thermophilus peptide Deformylase Def SWALL:DEF_THETH (SWALL:P43522) (192 aa) fasta scores: E(): 6.4e-15, 38.69% id in 168 aa, and to Mycobacterium leprae peptide deformylase Def or ml1929 SWALL:DEF_MYCLE (SWALL:Q9CBI2) (197 aa) fasta scores: E(): 8.2e-20, 39.6% id in 202 aa peptide deformylase
[B] Tropheryma whipplei (strain Twist)TROWT00308  UniProtKB/Swiss-Prot DEF_TROWT  formylmethionine deformylase
[B] Cyanothece sp. (strain PCC 7425 / ATCC 29141)CYAP402258  UniProtKB/TrEMBL B8HY87  Peptide deformylase
[B] Gloeobacter violaceusGLOVI02220  UniProtKB/Swiss-Prot DEF2_GLOVI  polypeptide deformylase
[B] Synechococcus sp. (strain CC9605)SYNSC02220  UniProtKB/Swiss-Prot DEF_SYNSC  Formylmethionine deformylase
[B] Dictyoglomus turgidum (strain Z-1310 / DSM 6724)DICTD01372  UniProtKB/Swiss-Prot DEF_DICTD  Peptide deformylase
[B] Bacillus anthracisBACAN03668  UniProtKB/Swiss-Prot DEF1_BACAN  similar to SP:P94462; identified by sequence similarity; putative polypeptide deformylase
[B] Bacillus cereus (strain AH187)BACC703705  UniProtKB/TrEMBL B7HLK0  Peptide deformylase
[B] Bacillus cereus (strain ATCC 10987)BACC103869  UniProtKB/TrEMBL Q732K3  identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079 polypeptide deformylase
[B] Bacillus cereus (strain ATCC 14579 / DSM 31)BACCR03667  UniProtKB/Swiss-Prot DEF1_BACCR  Polypeptide deformylase
[B] Bacillus cereus (strain G9842)BACC203866  UniProtKB/TrEMBL B7IUM6  Peptide deformylase
[B] Bacillus cereus (strain ZK)BACCZ03589  UniProtKB/TrEMBL Q636F9  peptide deformylase
[B] Bacillus thuringiensis (strain Al Hakam)BACAH03307  UniProtKB/TrEMBL A0RHP0  peptide deformylase
[B] Bacillus thuringiensis (subsp. konkukian)BACHK03547  UniProtKB/TrEMBL Q6HEU8  Structural feature(s) predicted by Psort:Transmembrane: 3705635 - 3705619 peptide deformylase
[B] Bacillus weihenstephanensis (strain KBAB4)BACWK03592  UniProtKB/TrEMBL A9VTA5  Peptide deformylase
[B] Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599)BREBN00864  UniProtKB/TrEMBL C0Z4W7  Peptide deformylase
[B] Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF)NATTJ01290  UniProtKB/Swiss-Prot DEF_NATTJ  Peptide deformylase
[B] Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906)METSB01111  UniProtKB/Swiss-Prot DEF_METSB  Peptide deformylase
[B] Rhodopseudomonas palustris (strain BisA53)RHOP500649  UniProtKB/Swiss-Prot DEF_RHOP5  peptide deformylase KEGG: rpc:RPC_0803 peptide deformylase TIGRFAM: peptide deformylase PFAM: formylmethionine deformylase
[B] Rhodopseudomonas palustris (strain BisB5)RHOPS00080  UniProtKB/Swiss-Prot DEF_RHOPS  Peptide deformylase
[B] Rhodopseudomonas palustris (strain HaA2)RHOP200672  UniProtKB/Swiss-Prot DEF_RHOP2  Peptide deformylase
[B] Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168)OCHA401323  UniProtKB/TrEMBL A6WYK7  Peptide deformylase
[B] Methylobacterium nodulans (strain ORS2060 / LMG 21967)METNO04455  UniProtKB/TrEMBL B8IFQ4  Peptide deformylase
[B] Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831)METRJ03086  UniProtKB/TrEMBL B1M6N7  Peptide deformylase
[B] Methylobacterium sp. (strain 4-46)METS403964  UniProtKB/TrEMBL B0UP42  Peptide deformylase
[B] Rhizobium lotiRHILO03733  UniProtKB/Swiss-Prot DEF_RHILO  N-formylmethionylaminoacyl-tRNA deformylase (EC 3.5.1.27)
[B] Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966)PARL100261  UniProtKB/TrEMBL A7HPQ1  Peptide deformylase
[B] Agrobacterium radiobacter (strain K84 / ATCC BAA-868)AGRRK00508  UniProtKB/TrEMBL B9J8C4  Peptide deformylase
[B] Agrobacterium tumefaciens (strain C58 / ATCC 33970)AGRT500352  UniProtKB/Swiss-Prot DEF_AGRT5  Peptide deformylase
[B] Rhizobium etli (strain CFN 42 / ATCC 51251)RHIEC00397  UniProtKB/TrEMBL Q2KD52  peptide deformylase protein similar to def1 (SMc01101) [Sinorhizobium meliloti] and AGR_C_640p [Agrobacterium tumefaciens] Similar to entrez-protein:Q92SH6 Putative location:bacterial cytoplasm Psort-Score: 0.4380; go_function: hydrolase activity [goid 0016787]; go_function: peptide deformylase activity [goid 0042586]; go_function: formylmethionine deformylase activity [goid 0008463]; go_process: protein biosynthesis [goid 0006412]
[B] Rhizobium etli (strain CIAT 652)RHIE600445  UniProtKB/TrEMBL B3PZF4  Peptide deformylase protein
[B] Rhizobium leguminosarum bv. trifolii (strain WSM2304)RHILW00055  UniProtKB/TrEMBL B5ZN17  Peptide deformylase
[B] Rhizobium leguminosarum bv. viciae (strain 3841)RHIL300432  UniProtKB/TrEMBL Q1MM81  putative peptide deformylase (polypeptide deformylase) similarity:fasta; with=UniProt:DEF_ECOLI (EMBL:H91147); Escherichia coli O157:H7.; def; Peptide deformylase (EC 3.5.1.88) (PDF) (Polypeptide deformylase).; length=168; id 47.337; 169 aa overlap; query 2-170; subject 1-166 similarity:fasta; with=UniProt:DEF_RHIME (EMBL:SME591783); Rhizobium meliloti (Sinorhizobium meliloti).; def; Peptide deformylase (EC 3.5.1.88) (PDF) (Polypeptide deformylase).; length=174; id 79.882; 169 aa overlap; query 1-169; subject 1-169
[B] Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)AZOC500795  UniProtKB/TrEMBL A8IQL9  Polypeptide or peptide deformylase family protein
[B] Maricaulis maris (strain MCS10)MARMM00439  UniProtKB/Swiss-Prot DEF_MARMM  Peptide deformylase
[B] Dinoroseobacter shibae (strain DFL 12)DINSH00179  UniProtKB/TrEMBL A8LLB8  Peptide deformylase
[B] Silicibacter pomeroyiSILPO03136  UniProtKB/TrEMBL Q5LNI5  identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079 peptide deformylase
[B] Silicibacter sp. (strain TM1040)SILST02570  UniProtKB/TrEMBL Q1GDF4  Peptide deformylase PFAM: formylmethionine deformylase: (2.5e-71) KEGG: sil:SPO3219 peptide deformylase, ev=6e-85, 88% identity
[B] Rhodospirillum centenum (strain ATCC 51521 / SW)RHOCS02232  UniProtKB/TrEMBL B6IPI3  Peptide deformylase, Def, putative
[B] Rickettsia akari (strain Hartford)RICAH00286  UniProtKB/Swiss-Prot DEF_RICAH  Peptide deformylase
[B] Rickettsia massiliae (strain Mtu5)RICM500201  UniProtKB/TrEMBL A8F0W4  Polypeptide deformylase
[B] Rickettsia prowazekiiRICPR00200  UniProtKB/Swiss-Prot DEF_RICPR  METHIONYL-TRNA DEFORMYLASE (def)
[B] Rickettsia rickettsii (strain Iowa)RICRO00304  UniProtKB/TrEMBL B0BWL0  peptide deformylase
[B] Rickettsia rickettsii (strain Sheila Smith)RICRS00293  UniProtKB/TrEMBL A8GR64  Peptide deformylase
[B] Rickettsia typhiRICTY00191  UniProtKB/Swiss-Prot DEF_RICTY  peptide deformylase
[B] Rickettsia conoriiRICCN00278  UniProtKB/Swiss-Prot DEF1_RICCN  Peptide deformylase 1
[B] Bordetella avium (strain 197N)BORA100201  UniProtKB/TrEMBL Q2L0L3  peptide deformylase
[B] Acidovorax sp. (strain JS42)ACISJ03787  UniProtKB/TrEMBL A1WD30  peptide deformylase KEGG: pol:Bpro_4639 peptide deformylase TIGRFAM: peptide deformylase PFAM: formylmethionine deformylase
[B] Delftia acidovorans (strain DSM 14801 / SPH-1)DELAS00832  UniProtKB/TrEMBL A9BS69  Peptide deformylase
[B] Diaphorobacter sp. (strain TPSY)DIAST03315  UniProtKB/TrEMBL B9MHW4  Peptide deformylase
[B] Verminephrobacter eiseniae (strain EF01-2)VEREI03963  UniProtKB/TrEMBL A1WQ80  Peptide deformylase
[B] Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)NEIG101663  UniProtKB/Swiss-Prot DEF_NEIG1  Best Blastp Hit: pir||E81238 formylmethionine deformylase (EC 3.5.1.31) NMA0164 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225325|gb|AAF40569.1| (AE002369) polypeptide deformylase [Neisseria meningitidis MC58] >gi|7378935|emb|CAB83478.1| (AL162752) polypeptide deformylase [Neisseria meningitidis] COG0242 N-formylmethionyl-tRNA deformylase; Pdf putative polypeptide deformylase
[B] Neisseria gonorrhoeae (strain NCCP11945)NEIG202315  UniProtKB/TrEMBL B4RPX3  Peptide deformylase
[B] Neisseria meningitidis serogroup ANEIMA00151  UniProtKB/Swiss-Prot DEF_NEIMA  Polypeptide deformylase
[B] Neisseria meningitidis serogroup BNEIMB00099  UniProtKB/Swiss-Prot DEF_NEIMB  Peptide deformylase
[B] Neisseria meningitidis serogroup C (strain 053442)NEIM001919  UniProtKB/Swiss-Prot DEF_NEIM0  polypeptide deformylase Code: J; COG: COG0242
[B] Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18)NEIMF00085  UniProtKB/Swiss-Prot DEF_NEIMF  Polypeptide deformylase
[B] Azoarcus sp. (strain EbN1)AZOSE01617  UniProtKB/TrEMBL Q5P4H5  N-formylmethionyl-tRNA deformylase 1
[B] Desulfococcus oleovorans (strain DSM 6200 / Hxd3)DESOH02219  UniProtKB/Swiss-Prot DEF_DESOH  Peptide deformylase
[B] Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240)AERHH00239  UniProtKB/TrEMBL A0KEX0  peptide deformylase identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079
[B] Aeromonas salmonicida (strain A449)AERS403767  UniProtKB/Swiss-Prot DEF_AERS4  Polypeptide deformylase
[B] Dichelobacter nodosus (strain VCS1703A)DICNV00146  UniProtKB/Swiss-Prot DEF_DICNV  Formylmethionine deformylase
[B] Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)NITOC02871  UniProtKB/Swiss-Prot DEF_NITOC  Peptide deformylase
[B] Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)CITK804551  UniProtKB/Swiss-Prot DEF_CITK8  Peptide deformylase
[B] Enterobacter sakazakii (strain ATCC BAA-894)ENTS800039  UniProtKB/Swiss-Prot DEF_ENTS8  Putative uncharacterized protein
[B] Enterobacter sp. (strain 638)ENT3803683  UniProtKB/Swiss-Prot DEF_ENT38  Peptide deformylase
[B] Erwinia tasmaniensis (strain DSM 17950 / ET1/99)ERWT903123  UniProtKB/Swiss-Prot DEF_ERWT9  Peptide deformylase
[B] Escherichia coli (strain 55989 / EAEC)ECO5503560  UniProtKB/Swiss-Prot DEF_ECO55  Peptide deformylase
[B] Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks)ECOLC00411  UniProtKB/Swiss-Prot DEF_ECOLC  Peptide deformylase
[B] Escherichia coli (strain DH10B)ECODH03057  UniProtKB/Swiss-Prot DEF_ECODH  Peptide deformylase
[B] Escherichia coli (strain K12)ECOLI03157  UniProtKB/Swiss-Prot DEF_ECOLI  Peptide deformylase
[B] Escherichia coli (strain SE11)ECOSE03544  UniProtKB/Swiss-Prot DEF_ECOSE  Polypeptide deformylase
[B] Escherichia coli (strain SMS-3-5 / SECEC)ECOSM03408  UniProtKB/Swiss-Prot DEF_ECOSM  Peptide deformylase
[B] Escherichia coli (strain UTI89 / UPEC)ECOUT03647  UniProtKB/Swiss-Prot DEF_ECOUT  peptide deformylase
[B] Escherichia coli O127:H6 (strain E2348/69 / EPEC)ECO2703487  UniProtKB/Swiss-Prot DEF_ECO27  Peptide deformylase
[B] Escherichia coli O139:H28 (strain E24377A / ETEC)ECO2403539  UniProtKB/TrEMBL A7ZSH5  Peptide deformylase
[B] Escherichia coli O157:H7ECO5703941  UniProtKB/Swiss-Prot DEF_ECO57  Residues 1 to 169 of 169 are 100.00 pct identical to residues 1 to 169 of 169 from Escherichia coli K-12 Strain MG1655: B3287 peptide deformylase
[B] Escherichia coli O157:H7 (strain EC4115 / EHEC)ECO5E03932  UniProtKB/Swiss-Prot DEF_ECO5E  Peptide deformylase
[B] Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)ECOLU03649  UniProtKB/Swiss-Prot DEF_ECOLU  Peptide deformylase
[B] Escherichia coli O1:K1 / APECECOK103261  UniProtKB/Swiss-Prot DEF_ECOK1  peptide deformylase
[B] Escherichia coli O45:K1 (strain S88 / ExPEC)ECO4503484  UniProtKB/Swiss-Prot DEF_ECO45  Peptide deformylase
[B] Escherichia coli O6ECOL603912  UniProtKB/Swiss-Prot DEF_ECOL6  Peptide deformylase
[B] Escherichia coli O6:K15:H31 (strain 536)ECOL503321  UniProtKB/Swiss-Prot DEF_ECOL5  peptide deformylase
[B] Escherichia coli O7:K1 (strain IAI39 / ExPEC)ECO7I03580  UniProtKB/Swiss-Prot DEF_ECO7I  Peptide deformylase
[B] Escherichia coli O81 (strain ED1a)ECO8103738  UniProtKB/Swiss-Prot DEF_ECO81  Peptide deformylase
[B] Escherichia coli O9:H4 (strain HS)ECOHS03225  UniProtKB/Swiss-Prot DEF_ECOHS  Peptide deformylase
[B] Proteus mirabilis (strain HI4320)PROMH03254  UniProtKB/TrEMBL B4F1L7  Polypeptide deformylase
[B] Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)SALAR04045  UniProtKB/Swiss-Prot DEF_SALAR  Putative uncharacterized protein
[B] Salmonella agona (strain SL483)SALA403331  UniProtKB/Swiss-Prot DEF_SALA4  Peptide deformylase
[B] Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67SALCH03293  UniProtKB/Swiss-Prot DEF_SALCH  IPR000181: Formylmethionine deformylase peptide deformylase
[B] Salmonella dublin (strain CT_02021853)SALDC03407  UniProtKB/Swiss-Prot DEF_SALDC  Peptide deformylase
[B] Salmonella enteritidis PT4 (strain P125109)SALEP03206  UniProtKB/Swiss-Prot DEF_SALEP  Polypeptide deformylase
[B] Salmonella gallinarum (strain 287/91 / NCTC 13346)SALG203877  UniProtKB/Swiss-Prot DEF_SALG2  Polypeptide deformylase
[B] Salmonella heidelberg (strain SL476)SALHS03443  UniProtKB/Swiss-Prot DEF_SALHS  Peptide deformylase
[B] Salmonella newport (strain SL254)SALNS03420  UniProtKB/Swiss-Prot DEF_SALNS  Peptide deformylase
[B] Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)SALPB04084  UniProtKB/Swiss-Prot DEF_SALPB  Putative uncharacterized protein
[B] Salmonella paratyphi A (strain AKU_12601)SALPK03178  UniProtKB/Swiss-Prot DEF_SALPK  Polypeptide deformylase
[B] Salmonella paratyphi-aSALPA03040  UniProtKB/Swiss-Prot DEF_SALPA  similar to Salmonella typhi Ty2 polypeptide deformylase polypeptide deformylase
[B] Salmonella schwarzengrund (strain CVM19633)SALSV03327  UniProtKB/Swiss-Prot DEF_SALSV  Peptide deformylase
[B] Salmonella typhiSALTI04007  UniProtKB/Swiss-Prot DEF_SALTI  Peptide deformylase
[B] Salmonella typhimuriumSALTY03263  UniProtKB/Swiss-Prot DEF_SALTY  similar to Escherichia coli peptide deformylase (AAC76312.1) peptide deformylase
[B] Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)SHIB302818  UniProtKB/Swiss-Prot DEF_SHIB3  Peptide deformylase
[B] Shigella boydii serotype 4 (strain Sb227)SHIBS02691  UniProtKB/Swiss-Prot DEF_SHIBS  Code: J; COG: COG0242 peptide deformylase
[B] Shigella dysenteriae serotype 1 (strain Sd197)SHIDS02697  UniProtKB/Swiss-Prot DEF_SHIDS  Code: J; COG: COG0242 peptide deformylase
[B] Shigella flexneriSHIFL02996  UniProtKB/Swiss-Prot DEF_SHIFL  Residues 1 to 169 of 169 are 99 pct identical to residues 1 to 169 of a 169 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289848.1 peptide deformylase
[B] Shigella flexneri serotype 5b (strain 8401)SHIF802832  UniProtKB/Swiss-Prot DEF_SHIF8  peptide deformylase Code: J; COG: COG0242
[B] Shigella sonnei (strain Ss046)SHISS02841  UniProtKB/Swiss-Prot DEF_SHISS  Code: J; COG: COG0242 peptide deformylase
[B] Sodalis glossinidius (strain morsitans)SODGM02212  UniProtKB/Swiss-Prot DEF_SODGM  polypeptide deformylase
[B] Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081)YERE803696  UniProtKB/Swiss-Prot DEF_YERE8  Polypeptide deformylase
[B] Yersinia pestisYERPE00222  UniProtKB/Swiss-Prot DEF_YERPE  Peptide deformylase
[B] Yersinia pestis (biovar Antiqua strain Antiqua)YERPA03051  UniProtKB/Swiss-Prot DEF_YERPA  Polypeptide deformylase
[B] Yersinia pestis (biovar Antiqua strain Nepal516)YERPN03671  UniProtKB/Swiss-Prot DEF_YERPN  Polypeptide deformylase
[B] Yersinia pestis (strain Pestoides F)YERPP00155  UniProtKB/Swiss-Prot DEF_YERPP  Polypeptide deformylase
[B] Yersinia pestis bv. Antiqua (strain Angola)YERPG00521  UniProtKB/Swiss-Prot DEF_YERPG  Peptide deformylase
[B] Yersinia pseudotuberculosisYERPS03641  UniProtKB/Swiss-Prot DEF_YERPS  Peptide deformylase
[B] Yersinia pseudotuberculosis (serotype O:1b / strain IP 31758)YERP303805  UniProtKB/Swiss-Prot DEF_YERP3  Peptide deformylase
[B] Yersinia pseudotuberculosis serotype IB (strain PB1/+)YERPB03784  UniProtKB/Swiss-Prot DEF_YERPB  Peptide deformylase
[B] Yersinia pseudotuberculosis serotype O:3 (strain YPIII)YERPY00312  UniProtKB/Swiss-Prot DEF_YERPY  Peptide deformylase
[B] Blochmannia pennsylvanicus (strain BPEN)BLOPB00210  UniProtKB/Swiss-Prot DEF_BLOPB  ortholog to Escherichia coli bnum: b3287; MultiFun: Information transfer 2.3.3 polypeptide deformylase
[B] Psychrobacter cryohalolentis (strain K5)PSYCK00038  UniProtKB/Swiss-Prot DEF_PSYCK  Peptide deformylase
[B] Photobacterium profundumPHOPR03260  UniProtKB/TrEMBL Q6LLJ3  Putative polypeptide deformylase
[B] Treponema denticolaTREDE01632  UniProtKB/TrEMBL Q73M64  identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079 polypeptide deformylase
[B] Thermotoga maritimaTHEMA01639  UniProtKB/Swiss-Prot DEF_THEMA  Peptide deformylase
[B] Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995)THEP101114  UniProtKB/Swiss-Prot DEF_THEP1  Peptide deformylase
[B] Thermotoga sp. (strain RQ2)THESQ01150  UniProtKB/Swiss-Prot DEF_THESQ  Peptide deformylase