List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 210170

3-phosphoshikimate 1-carboxyvinyltransferase
This group has 15 members: 15 [B]acteria
Fingerprint: IEVPPER

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Acidobacteria bacterium (strain Ellin345)ACIBL03606   ABF42615.1  3-phosphoshikimate 1-carboxyvinyltransferase
[B] Bacillus weihenstephanensis (strain KBAB4)BACWK02678  UniProtKB/TrEMBL A9VJE0  3-phosphoshikimate 1-carboxyvinyltransferase
[B] Staphylococcus haemolyticus (strain JCSC1435)STAHJ01409  UniProtKB/Swiss-Prot AROA_STAHJ  3-phosphoshikimate 1-carboxyvinyltransferase
[B] Sinorhizobium medicae (strain WSM419)SINMW03390  UniProtKB/TrEMBL A6UF44  3-phosphoshikimate 1-carboxyvinyltransferase
[B] Dinoroseobacter shibae (strain DFL 12)DINSH01007  UniProtKB/Swiss-Prot AROA_DINSH  3-phosphoshikimate 1-carboxyvinyltransferase
[B] Jannaschia sp. (strain CCS1)JANSC00706  UniProtKB/Swiss-Prot AROA_JANSC  3-phosphoshikimate 1-carboxyvinyltransferase
[B] Silicibacter pomeroyiSILPO03809  UniProtKB/TrEMBL Q5LLK7  identified by match to protein family HMM PF00275; match to protein family HMM TIGR01356 3-phosphoshikimate 1-carboxyvinyltransferase
[B] Silicibacter sp. (strain TM1040)SILST00199  UniProtKB/Swiss-Prot AROA_SILST  3-phosphoshikimate 1-carboxyvinyltransferase KEGG: sil:SPOA0015 3-phosphoshikimate 1-carboxyvinyltransferase, ev=0.0, 87% identity TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase: (2.3e-157) PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase): (7.5e-101)
[B] Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255)RHORT00294  UniProtKB/Swiss-Prot AROA_RHORT  3-phosphoshikimate 1-carboxyvinyltransferase
[B] Anaeromyxobacter dehalogenans (strain 2CP-C)ANADE00183  UniProtKB/Swiss-Prot AROA_ANADE  3-phosphoshikimate 1-carboxyvinyltransferase
[B] Anaeromyxobacter sp. (strain Fw109-5)ANADF00202  UniProtKB/Swiss-Prot AROA_ANADF  3-phosphoshikimate 1-carboxyvinyltransferase
[B] Campylobacter fetus subsp. fetus (strain 82-40)CAMFF01195  UniProtKB/Swiss-Prot AROA_CAMFF  3-phosphoshikimate 1-carboxyvinyltransferase identified by match to protein family HMM PF00275; match to protein family HMM TIGR01356
[B] Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH)NAUPA00870  UniProtKB/TrEMBL B9L9K4  3-phosphoshikimate 1-carboxyvinyltransferase
[B] Carsonella ruddii (strain PV)CARRP00049  UniProtKB/TrEMBL Q05FU1  3-phosphoshikimate 1-carboxyvinyltransferase
[B] Dichelobacter nodosus (strain VCS1703A)DICNV00101  UniProtKB/Swiss-Prot AROA_DICNV  3-phosphoshikimate 1-carboxyvinyltransferase