List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 195347

Cytidine deaminase
This group has 9 members: 3 [A]rchaea 6 [B]acteria
Fingerprint: IDYVFVY

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[A] Aeropyrum pernixAERPE00717  UniProtKB/TrEMBL Q9YD74  Cytidine deaminase
[A] Desulfurococcus kamchatkensis (strain 1221n / DSM 18924)DESK100604  UniProtKB/TrEMBL B8D4A3  Cytidine deaminase
[A] Caldivirga maquilingensis (strain DSMZ 13496 / IC-167)CALMQ00721  UniProtKB/TrEMBL A8MCS0  Cytidine deaminase
[B] Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008)CARHZ01500  UniProtKB/TrEMBL Q3ABU9  identified by match to protein family HMM PF00383; match to protein family HMM TIGR01354 cytidine deaminase
[B] Mycoplasma genitaliumMYCGE00050  UniProtKB/Swiss-Prot CDD_MYCGE  Cytidine deaminase
[B] Mycoplasma mobileMYCMO00347  UniProtKB/TrEMBL Q6KHU5  COG0295; expression validated by proteogenomic mapping: 7 unique peptides covering 54.2% of sequence cytidine deaminase
[B] Mycoplasma pneumoniaeMYCPN00065  UniProtKB/Swiss-Prot CDD_MYCPN  Cytidine deaminase
[B] Mycoplasma pulmonisMYCPU00378  UniProtKB/TrEMBL Q98QI2  identified by sequence similarity; possible; similar to SWISS-PROT:P19079 (CDD_BACSU) Blastp2 P=1e-17 C=59% CYTIDINE DEAMINASE (CYTIDINE AMINOHYDROLASE) (CDA)
[B] Mycoplasma synoviae (strain 53)MYCS500375   AAZ43800.1  identified by sequence similarity; putative; ORF located using Blastx; COG0295 cytidine deaminase