List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 989

peptidyl-tRNA hydrolase
This group has 7 members: 4 [E]ukaryota 3 [B]acteria
Fingerprint: IGKPPGQ

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[E] Sorghum bicolorSORBI08415   4784422  jgi|Sorbi1|4784422|e_gw1.1.15542.1
[E] Populus trichocarpaPOPTR40606  UniProtKB/TrEMBL B9GLE8  jgi|Poptr1_1|814770|estExt_fgenesh4_pg.C_LG_I0045 [DNA did not match protein] [DNA partly invalid]
[E] Arabidopsis thalianaARATH22164  UniProtKB/Swiss-Prot PTHM_ARATH  similar to peptidyl-tRNA hydrolase family protein [Arabidopsis thaliana] (TAIR:At5g16140.1); similar to CRS2 [Zea mays] (GB:AAF27939.1); similar to A Chain A, Crystal Structure Of The Chloroplast Group Ii Intron Splicing Factor Crs2 (GB:1RYB); contains InterPro domain Peptidyl-tRNA hydrolase (InterPro:IPR001328); go_component: endomembrane system [goid GO:0004045@[IEA,ISS]; GO:0005739@[IEA]; GO:0006412@[IEA,ISS]; GO:0012505@[NR]] [evidence IEA]; go_function: aminoacyl-tRNA hydrolase activity [goid GO:0004045] [evidence IEA]; go_function: aminoacyl-tRNA hydrolase activity [goid GO:0004045] [evidence ISS]; go_process: protein biosynthesis [goid GO:0006412] [evidence IEA]; go_process: protein biosynthesis [goid GO:0006412] [evidence ISS] aminoacyl-tRNA hydrolase
[E] Vitis viniferaVITVI00804  UniProtKB/TrEMBL A7P074  
[B] Corynebacterium jeikeium (strain K411)CORJK01435  UniProtKB/Swiss-Prot PTH2_CORJK  Peptidyl-tRNA hydrolase 2 (EC 3.1.1.29) (PTH 2).,The natural substrate for this enzyme may be peptidyl- tRNAS which drop off the ribosome during protein synthesis (By similarity).
[B] Chlorobium chlorochromatii (strain CaD3)CHLCH01062   ABB28351.1  Peptidyl-tRNA hydrolase
[B] Opitutus terrae (strain DSM 11246 / PB90-1)OPITP02268  UniProtKB/TrEMBL B1ZPW9  Aminoacyl-tRNA hydrolase