List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 4001

Alpha amylase catalytic region
This group has 7 members: 4 [A]rchaea 3 [B]acteria
Fingerprint: NAFNEGS

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[A] Thermofilum pendens (strain Hrk 5)THEPD01445  UniProtKB/TrEMBL A1S075  Alpha amylase, catalytic region
[A] Pyrococcus furiosusPYRFU01926  UniProtKB/TrEMBL Q8TZP8  Neopullulanase
[A] Thermococcus kodakaraensisPYRKO01764  UniProtKB/TrEMBL Q5JJ59  cyclomaltodextrinase
[A] Thermococcus onnurineus (strain NA1)THEON01803  UniProtKB/TrEMBL B6YV58  Cyclomaltodextrinase
[B] Cyanothece sp. (strain PCC 7425 / ATCC 29141)CYAP400324  UniProtKB/TrEMBL B8HU05  Alpha amylase catalytic region
[B] Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15)EXIS200740  UniProtKB/TrEMBL B1YKP7  Alpha amylase catalytic region
[B] Serratia proteamaculans (strain 568)SERP501037  UniProtKB/TrEMBL A8GAL3  Alpha amylase catalytic region