List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 25321

Peptide deformylase
This group has 7 members: 7 [B]acteria
Fingerprint: GWQARIV

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Acidobacteria bacterium (strain Ellin345)ACIBL03907  UniProtKB/TrEMBL Q1IJN4  Peptide deformylase
[B] Arthrobacter aurescens (strain TC1)ARTAT02095  UniProtKB/TrEMBL A1R6S4  Peptide deformylase
[B] Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360)ARTCA01905  UniProtKB/TrEMBL B8H8N2  Peptide deformylase
[B] Arthrobacter sp. (strain FB24)ARTS202169  UniProtKB/TrEMBL A0JX03  Peptide deformylase PFAM: formylmethionine deformylase KEGG: sco:SCO0883 polypeptide deformylase
[B] Phytoplasma sp. (strain STRAWB1)STRAW07346  UniProtKB/Swiss-Prot DEF3_STRAW  Peptide deformylase 3
[B] Streptomyces coelicolorSTRCO00867  UniProtKB/Swiss-Prot DEF1_STRCO  SCM1.16, probable polypeptide deformylase (EC 3.5.1.31), len: 218 aa. Similar to many members of the polypeptide deformylase family e.g. Thermus aquaticus SW:DEF_THETH (EMBL:X79087) polypeptide deformylase (EC 3.5.1.31) (192 aa), fasta scores opt: 321 z-score: 384.1 E(): 4.8e-14 39.0% identity in 164 aa overlap. Contains a Pfam match to entry PF01327 Pep_deformylase, Polypeptide deformylase. polypeptide deformylase.
[B] Methylococcus capsulatusMETCA01275  UniProtKB/TrEMBL Q608W7  identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079 polypeptide deformylase