List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 33780

Glycosyl hydrolase BNR repeat-containing protein precursor
This group has 11 members: 11 [B]acteria
Fingerprint: GVFKSTN

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Streptomyces coelicolorSTRCO06501  UniProtKB/TrEMBL O86727  SC5C7.30c, probable secreted cellulase, len: 890 aa; similar to TR:D1029971 (EMBL:AB015511) Aspergillus aculeatus avicelase III (856 aa), fasta scores; opt: 2099 z-score: 1414.5 E(): 0, 44.5% identity in 845 aa overlap, and to many others e.g. GUNA_MICBI endoglucanase A precursor (EC 3.2.1.4) (456 aa), fasta scores; opt: 416 z-score: 340.7 E(): 9.9e-12, 28.5% identity in 449 aa overlap (strongest in the cellulose-binding domain). Contains probable N-terminal signal sequence and Pfam match to entry PF00553 CBD_1, Cellulose binding domain, score 171.70, E-value 8.5e-49 at C-terminus putative secreted cellulase
[B] Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785)HERA202116  UniProtKB/TrEMBL A9AWC8  Cellulose-binding family II precursor
[B] Burkholderia ambifaria (strain MC40-6)BURA404757  UniProtKB/TrEMBL B1YYN0  Glycosyl hydrolase BNR repeat-containing protein precursor
[B] Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB)SYNFM03408  UniProtKB/TrEMBL A0LP13  hypothetical protein KEGG: aba:Acid345_1898 glycosyl hydrolase
[B] Xanthomonas axonopodis (pv. citri)XANAC01724  UniProtKB/TrEMBL Q8PLM5  identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark cellulase
[B] Xanthomonas campestris pv. campestrisXANCP01704  UniProtKB/TrEMBL Q8P9U5  Cellulase
[B] Xanthomonas campestris pv. campestris (strain 8004)XANC802401  UniProtKB/TrEMBL Q4UTU0  cellulase
[B] Xanthomonas campestris pv. campestris (strain B100)XANCB02503  UniProtKB/TrEMBL B0RTV6  Exported putative glycosyl hydrolase
[B] Xanthomonas campestris pv. vesicatoria (strain 85-10)XANC501766  UniProtKB/TrEMBL Q3BUN0  putative cellulase
[B] Thermotoga maritimaTHEMA00300  UniProtKB/TrEMBL Q9WYE1  Endoglucanase, putative
[B] Thermotoga sp. (strain RQ2)THESQ00617  UniProtKB/TrEMBL B1L9I1  Glycosyl hydrolase BNR repeat-containing protein precursor