List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 185028

Xylan 1,4-beta-xylosidase
This group has 25 members: 1 [E]ukaryota 24 [B]acteria
Fingerprint: VTMARSR

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[E] Phaeosphaeria nodorumPHANO02983   SNU00345.1  hypothetical protein
[B] Solibacter usitatus (strain Ellin6076)SOLUE05520  UniProtKB/TrEMBL Q01US6  Alpha-N-arabinofuranosidase PFAM: glycoside hydrolase, family 43 KEGG: ccr:CC0989 xylan 1,4-beta-xylosidase
[B] Bacillus amyloliquefaciens (strain FZB42)BACA201647  UniProtKB/TrEMBL A7Z520  XynB
[B] Bacillus clausii (strain KSM-K16)BACSK00551  UniProtKB/TrEMBL Q5WKL1  beta xylosidase xylan 1,4-beta-xylosidase
[B] Bacillus pumilus (strain SAFR-032)BACP201797  UniProtKB/TrEMBL A8FE35  Xylan 1,4-beta-xylosidase
[B] Bacillus subtilisBACSU01757   CAB13642.1  Xylan beta-1,4-xylosidase
[B] Geobacillus thermodenitrificans (strain NG80-2)GEOTN01717  UniProtKB/TrEMBL A4IP68  Xylan 1,4-beta-xylosidase
[B] Oceanobacillus iheyensisOCEIH03120  UniProtKB/TrEMBL Q8CWF7  CDS_ID OB3125; beta-xylosidase xylan 1,4-beta-xylosidase
[B] Alkaliphilus metalliredigens (strain QYMF)ALKMQ03054  UniProtKB/TrEMBL A6TTC7  Alpha-N-arabinofuranosidase
[B] Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052)CLOB804029  UniProtKB/TrEMBL A6M0V6  Alpha-N-arabinofuranosidase
[B] Caulobacter crescentusCAUCR00977  UniProtKB/TrEMBL Q9A9J1  Xylan 1,4-beta-xylosidase
[B] Caulobacter sp. (strain K31)CAUSK00908  UniProtKB/TrEMBL B0SVM8  Alpha-N-arabinofuranosidase
[B] Phenylobacterium zucineum (strain HLK1)PHEZH02448  UniProtKB/TrEMBL B4RGG6  Xylan 1,4-beta-xylosidase
[B] Agrobacterium radiobacter (strain K84 / ATCC BAA-868)AGRRK01988  UniProtKB/TrEMBL B9JFU8  Beta-xylosidase protein
[B] Rhizobium etli (strain CFN 42 / ATCC 51251)RHIEC02387  UniProtKB/TrEMBL Q2K7F6  beta-xylosidase protein similar to XynA [Rhizobium leguminosarum bv. trifolii] and SMc04247 [Sinorhizobium meliloti] Similar to entrez-protein:AAL14914.1 Putative location:bacterial cytoplasm Psort-Score: 0.3671
[B] Rhizobium etli (strain CIAT 652)RHIE602514  UniProtKB/TrEMBL B3PQT5  Beta-xylosidase protein
[B] Rhizobium leguminosarum bv. trifolii (strain WSM2304)RHILW02063  UniProtKB/TrEMBL B5ZSD3  Alpha-N-arabinofuranosidase
[B] Rhizobium leguminosarum bv. viciae (strain 3841)RHIL302780  UniProtKB/TrEMBL Q1MFJ6  putative glycosyl hydrolase similarity:fasta; with=UniProt:Q68HB3_BACST (EMBL:AY690618); Bacillus stearothermophilus.; xynB3; Beta-D-xylosidase.; length=535; id 48.998; 549 aa overlap; query 2-537; subject 4-535 similarity:fasta; with=UniProt:Q93E12_RHILT (EMBL:AF372655); Rhizobium leguminosarum (biovar trifolii).; xynA; XynA.; length=537; id 100.000; 537 aa overlap; query 1-537; subject 1-537
[B] Rhizobium melilotiRHIME01896  UniProtKB/TrEMBL Q92P74  Product confidence : putative Gene name confidence : hypothetical predicted by Codon_usage predicted by Homology predicted by FrameD PUTATIVE BETA-XYLOSIDASE PROTEIN
[B] Sinorhizobium medicae (strain WSM419)SINMW01666  UniProtKB/TrEMBL A6UA65  Alpha-N-arabinofuranosidase
[B] Sorangium cellulosum (strain So ce56)SORC500126  UniProtKB/TrEMBL A9GLJ1  Beta-xylosidase
[B] Enterobacter sp. (strain 638)ENT3800454  UniProtKB/TrEMBL A4W615  Alpha-N-arabinofuranosidase
[B] Escherichia coli (strain DH10B)ECODH00236  UniProtKB/TrEMBL B1XE14  CP4-6 prophage; predicted xylosidase/arabinosidase
[B] Escherichia coli (strain K12)ECOLI00259  UniProtKB/Swiss-Prot YAGH_ECOLI  Putative beta-xylosidase
[B] Opitutus terrae (strain DSM 11246 / PB90-1)OPITP03514  UniProtKB/TrEMBL B1ZVF5  Alpha-N-arabinofuranosidase