List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 267840

alanine dehydrogenase
This group has 14 members: 14 [B]acteria
Fingerprint: GNCEYIV

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Staphylococcus aureus (strain COL)STAAC01438  UniProtKB/Swiss-Prot DHA1_STAAC  identified by match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518 alanine dehydrogenase
[B] Staphylococcus aureus (strain JH1)STAA201488  UniProtKB/TrEMBL A6U1Q9  alanine dehydrogenase TIGRFAM: alanine dehydrogenase PFAM: alanine dehydrogenase/PNT domain protein; malic protein NAD-binding KEGG: saa:SAUSA300_1331 alanine dehydrogenase
[B] Staphylococcus aureus (strain JH9)STAA901459  UniProtKB/TrEMBL A5ISX0  L-alanine dehydrogenase TIGRFAM: alanine dehydrogenase PFAM: alanine dehydrogenase/PNT domain protein; malic enzyme, NAD-binding
[B] Staphylococcus aureus (strain MRSA252)STAAR01405  UniProtKB/Swiss-Prot DHA1_STAAR  Similar to Bacillus subtilis alanine dehydrogenase Ald SW:DHA_BACSU (Q08352) (378 aa) fasta scores: E(): 1.2e-56, 46.612% id in 369 aa, and to Enterobacter aerogenes alanine dehydrogenase AlaDH TR:Q9WX54 (EMBL:AB013821) (377 aa) fasta scores: E(): 2.2e-57, 47.568% id in 370 aa alanine dehydrogenase 2
[B] Staphylococcus aureus (strain MSSA476)STAAS01386  UniProtKB/Swiss-Prot DHA1_STAAS  Ortholog of S. aureus MRSA252 (BX571856) SAR1451 alanine dehydrogenase 2
[B] Staphylococcus aureus (strain MW2)STAAW01327  UniProtKB/Swiss-Prot DHA1_STAAW  alanine dehydrogenase
[B] Staphylococcus aureus (strain NCTC 8325)STAA801364  UniProtKB/Swiss-Prot DHA1_STAA8  alanine dehydrogenase
[B] Staphylococcus aureus (strain Newman)STAAE01307  UniProtKB/TrEMBL A6QGY9  Alanine dehydrogenase 2
[B] Staphylococcus aureus (strain USA300 / TCH1516)STAAT01340  UniProtKB/TrEMBL A8Z418  alanine dehydrogenase
[B] Staphylococcus aureus (strain USA300)STAA301304  UniProtKB/Swiss-Prot DHA1_STAA3  alanine dehydrogenase identified by match to protein family HMM PF01262; match to protein family HMM PF03949; match to protein family HMM PF05222; match to protein family HMM TIGR00518
[B] Staphylococcus aureus (strain bovine RF122)STAAB01296  UniProtKB/Swiss-Prot DHA1_STAAB  alanine dehydrogenase
[B] Enterobacter sp. (strain 638)ENT3801835  UniProtKB/TrEMBL A4W9Z7  NAD(P) transhydrogenase, alpha subunit
[B] Shigella flexneriSHIFL01467   NP_707500.1  Residues 19 to 528 of 528 are 99 pct identical to residues 1 to 510 of a 510 aa protein from Escherichia coli K12 ref: NP_416120.1 pyridine nucleotide transhydrogenase, alpha subunit
[B] Shigella flexneri serotype 5b (strain 8401)SHIF801374  UniProtKB/TrEMBL Q0T4H4  pyridine nucleotide transhydrogenase, alpha subunit Code: C; COG: COG3288