List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 32241

Glycoside Hydrolase Family 48
This group has 13 members: 13 [B]acteria
Fingerprint: PSYINTF

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Salinispora arenicola (strain CNS-205)SALAI03034  UniProtKB/TrEMBL A8LUZ5  Glycoside hydrolase family 48
[B] Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440)SALTO02899  UniProtKB/TrEMBL A4X938  Cellulose 1,4-beta-cellobiosidase precursor
[B] Phytoplasma sp. (strain STRAWB1)STRAW01855  UniProtKB/TrEMBL Q82M05  Putative secreted cellulose 1,4-beta- cellobiosidase
[B] Streptomyces coelicolorSTRCO06502  UniProtKB/TrEMBL O86728  SC5C7.31c, probable secreted cellulase, len: 973 aa; N-terminus is similar to the cellulose binding domain of e.g. GUN4_THEFU endoglucanase E-4 precursor (880 aa), fasta scores; opt: 341 z-score: 352.0 E(): 2.3e-12, 43.7% identity in 103 aa overlap. C-terminus is similar to many cellulases e.g. GUXB_CELFI exoglucanase B precursor (1090 aa), fasta scores; opt: 2997 z-score: 2688.8 E(): 0, 61.4% identity in 699 aa overlap. Contains probable N-terminal signal sequence and Pfam match to entry PF00553 CBD_1, Cellulose binding domain, score 122.30, E-value 2.4e-34 near N-terminus putative secreted cellulase
[B] Thermobifida fusca (strain YX)THEFY01950  UniProtKB/TrEMBL Q47NH7  cellulose-binding, family II, bacterial type
[B] Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785)HERA200293  UniProtKB/TrEMBL A9B7H4  Glycoside hydrolase family 48 precursor
[B] Bacillus licheniformis (strain DSM 13 / ATCC 14580)BACLD01767  UniProtKB/TrEMBL Q65JI8  InterProMatches:IPR008928,GH family 48A Glycoside Hydrolase Family 48
[B] Bacillus pumilus (strain SAFR-032)BACP201538  UniProtKB/TrEMBL A8FDC4  Cellulose 1,4-beta-cellobiosidase
[B] Clostridium acetobutylicumCLOAB00900  UniProtKB/TrEMBL Q97KK7  Possible processive endoglucanase family 48, secreted; CelF ortholog; dockerin domain
[B] Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10)CLOCE00710  UniProtKB/Swiss-Prot GUNF_CLOCE  glycoside hydrolase family 48 PFAM: glycoside hydrolase family 48; cellulosome protein dockerin type I; KEGG: cpy:Cphy_3368 cellulose 1,4-beta-cellobiosidase
[B] Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)CLOPH03317  UniProtKB/TrEMBL A9KT91  Cellulose 1,4-beta-cellobiosidase precursor
[B] Clostridium thermocellum (strain ATCC 27405 / DSM 1237)CLOTH01979  UniProtKB/Swiss-Prot GUNS_CLOTH  Endoglucanase SS precursor
[B] Hahella chejuensis (strain KCTC 2396)HAHCH02322  UniProtKB/TrEMBL Q2SJA2  RTX toxins and related Ca2+-binding protein COG2931